View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_11 (Length: 390)
Name: NF12718_low_11
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 47712325 - 47712018
Alignment:
| Q |
10 |
gaagcaaaggcagatccagtaaaagggaagagcacaccaatacagcattgaaagagctaatagtaaacaaaaatcaacatcgcacaatattttatcaaat |
109 |
Q |
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|||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712325 |
gaagcataggcagatacagcaaaagggaagagcacaccaatacagcattgaaagagctaatagtaaacaaaaatcaacatcgcacaatattttatcaaat |
47712226 |
T |
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| Q |
110 |
agttttcttagatcatattgaagtgcccatattttcttccttaatataaatctgtcagccaaatatgacttaccctttttccccattcatatgcttggtc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712225 |
agttttcttagatcatattgaagtgcccatattttc---cttaatataaatctgtcagccaaatatgacttaccctttttccccattcatatgcttggtc |
47712129 |
T |
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| Q |
210 |
aagcacatatgagcactccatttcttcaaagctcattaaagtaaacaggaaggcaaacttttgttagatctttccctatattttccttgatcatccacca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47712128 |
aagcacatatgagcactccatttcttcaaagctcattaaagtaaacaggaaggcaaacttttgttagatctttccctatattttccttgatcattgacca |
47712029 |
T |
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| Q |
310 |
aagactaacac |
320 |
Q |
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||||||||||| |
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| T |
47712028 |
aagactaacac |
47712018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 32886074 - 32885852
Alignment:
| Q |
30 |
aaaagggaagagcacaccaatacagcattgaaagagctaatag-taaacaaaaatcaacatcgcacaatattttatcaaatagttttcttagatcatatt |
128 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32886074 |
aaaagggaagagcacaccaatactccattgaaagagctaataggtaaacaaaaatcaacatcgcgcaatattttatcaaatagttttcttagatcatatt |
32885975 |
T |
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| Q |
129 |
gaagtgcccatattttcttcctt----------aatataaatctgtcagccaaatatgacttaccctttttccccattcatatgcttggtcaagcacata |
218 |
Q |
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||||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32885974 |
gaagtgcccatattttccttaatatggaagagcaatataaatctgtcagccaaatctgacttaccctttttccccattcatatgcttggtcaagcagata |
32885875 |
T |
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| Q |
219 |
tgagcactccatttcttcaaagc |
241 |
Q |
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|||| |||||||||||||||||| |
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| T |
32885874 |
tgagtactccatttcttcaaagc |
32885852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 32885830 - 32885750
Alignment:
| Q |
240 |
gctcattaaagtaaacaggaaggcaaacttttgttagatctttccctatattttccttgatcatccaccaaagactaacac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
32885830 |
gctcattaaagtaaacaggaaggcaaacttttgttagatctttccctatattatccttgatcattgaccaaagactgacac |
32885750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 24481624 - 24481563
Alignment:
| Q |
176 |
gacttaccctttttccccattcatatgcttggtcaagcacatatgagcactccatttcttca |
237 |
Q |
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||||||| ||||||||||||||||| ||| ||||||| | ||||||| |||||||||||||| |
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| T |
24481624 |
gacttactctttttccccattcataagctcggtcaaggagatatgagtactccatttcttca |
24481563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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