View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_14 (Length: 359)
Name: NF12718_low_14
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 48672663 - 48672321
Alignment:
| Q |
1 |
tgttatatatgcctcagtgtaacagtatgcaatatcacaagccaggaattaaaatttaaaacaccaacttaactaaaactaccattatttcatatcctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672663 |
tgttatatatgcctcagtgtaacagtatgcaatatcacaagccaggaattaaaatttaaaacaccaacttaactaaaactaccattatttcatatcctaa |
48672564 |
T |
|
| Q |
101 |
ataagtcttaatttcataatcatcatcactgatcaatatcatagattgatcataataataaaagtgctttttaattgagagaagcagggtatgcatcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672563 |
ataagtcttaatttcataatcatcatcactgatcaatatcatagattgatcataataataaaagtgctttttaattgagagaagcagggtatgcatcaat |
48672464 |
T |
|
| Q |
201 |
gcagtcaagccaagggttcctagaagaaggttttgtaacacgacgcatcgaacgccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672463 |
gcagtcaagccaagggttcctagaagaaggttttgtaacacgacgcatcgaacgccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgc |
48672364 |
T |
|
| Q |
301 |
caaacacggtctcctcttttaactttttccttagcttccatat |
343 |
Q |
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| T |
48672363 |
caaacacggtctcctcttttaactttttccttagcttccatat |
48672321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 15239705 - 15239657
Alignment:
| Q |
255 |
ccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaa |
303 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||| ||||||| |
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| T |
15239705 |
ccaaacagcactattacacttaaaaccagaaccaaatgcaatttgccaa |
15239657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 34053407 - 34053356
Alignment:
| Q |
252 |
acgccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaa |
303 |
Q |
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|||||| |||||||||||||| ||||| ||||||||||| |||| ||||||| |
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| T |
34053407 |
acgccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaa |
34053356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 19742804 - 19742853
Alignment:
| Q |
255 |
ccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaaa |
304 |
Q |
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|||||||||| ||||||||||||| ||||| ||||| |||| |||||||| |
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| T |
19742804 |
ccaaacagcagtgttacacttaaatccagacccaaatgcaatttgccaaa |
19742853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 19797284 - 19797235
Alignment:
| Q |
255 |
ccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaaa |
304 |
Q |
| |
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|||||||||| ||||||||||||| ||||| ||||| |||| |||||||| |
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| T |
19797284 |
ccaaacagcagtgttacacttaaatccagacccaaatgcaatttgccaaa |
19797235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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