View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_15 (Length: 343)
Name: NF12718_low_15
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 22 - 333
Target Start/End: Complemental strand, 18577112 - 18576801
Alignment:
| Q |
22 |
ggggacgctaaaactttgttttatattaggtgacatatgaaccttcttttagttaagccgcaaaagaacttctacccaaaaaggcattaatattataaaa |
121 |
Q |
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| T |
18577112 |
ggggacgctaaaactttgttttatattaggtgacatatgaaccttcttttagttaagccgcaaaagaacttctacccaaaaaggcattaatattataaaa |
18577013 |
T |
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| Q |
122 |
catatataatgaacaaaaaggataaagggaaagatggaatgaaatttggaaacttaccaatatatagcatttttgcatcgtgagcatcttttgattatgt |
221 |
Q |
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| T |
18577012 |
catatataatgaacaaaaaggataaagggaaagatggaaagaaatttgaaaacttaccaatatatagcatttttgcatcgtgagcatcttttgattatgt |
18576913 |
T |
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| Q |
222 |
ttctgaatttgccacaaaaggagcaaacacaatattcatttagtttgttctcttcatcatcttgttcaaacaataatatttcatcactaacttccacctc |
321 |
Q |
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| T |
18576912 |
ttctgaatttgccacaaaaggagcaaacacaatattcatttagtttgttctcttcatcctcttgttcaaacaataatatttcatcactaacttccacctc |
18576813 |
T |
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| Q |
322 |
ctcatccctttg |
333 |
Q |
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| T |
18576812 |
ctcatccctttg |
18576801 |
T |
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