View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_16 (Length: 331)
Name: NF12718_low_16
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 42798920 - 42798607
Alignment:
| Q |
18 |
caaagcatcattatattctttgcttcatgatatgagtggcatatcttcacctcccagtccatttctacaagtctttgaatacactcgataagactccttt |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798920 |
caaagcatcattatattctttgcttcatgatacgagtggcatatcttcacctcccagtccatttctacaagtctttgaatacactcgataagactccttt |
42798821 |
T |
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| Q |
118 |
ccaacaatgttcatacattactctgcgtaacataattaacaacagtctctctcacaatccacacataactccactgctttaaaacctgtactctttgcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798820 |
ccaacaatgttcatacattactctgcgtaacataattaacaacagtctctctcacaatccacacataactccactgctttaaaacctgtactctttgcaa |
42798721 |
T |
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| Q |
218 |
gtcgcaacccttctaaaactccccacaattctgcctcaagctccactcaacggcccatgttaaacattttgaaaagcaacagatccagttactgtgatta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798720 |
gtcgcaacccttctaaaactccccacaattctgcctcaagctccactcaacggcccatgttaaacattttgaaaagcaacagatccagttactgtgatta |
42798621 |
T |
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| Q |
318 |
tcccaaagttagcc |
331 |
Q |
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|||||||||||||| |
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| T |
42798620 |
tcccaaagttagcc |
42798607 |
T |
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