View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_2 (Length: 534)
Name: NF12718_low_2
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 37826588 - 37827094
Alignment:
| Q |
18 |
attctcagccaatatgttcttgtatattctctttatgttcttcattaaggtaagactcagaccnnnnnnnnnnnnnnncctgacacttattattgcaaac |
117 |
Q |
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| T |
37826588 |
attctcagccaatatgttcttgtatattctctttatgttcttcattaaggtaagactcagaccatatatataatatatcctgacacttattattgcaaac |
37826687 |
T |
|
| Q |
118 |
cccacctcatatacacaaatatatgtctcaattagcaaactcattttcgcgaggctagcgtttttcatgacctggagttctctgtagcttcggaactggg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37826688 |
cccacctcatatacacaaatatatgtctcaattagcaaactcattttcgtgaggctagcgtttttcatgacctggagttctctgtagcttcggaactggg |
37826787 |
T |
|
| Q |
218 |
gtcacgaaaaacttaacgacgacgaacatcttgctacaacgtcgccaccttgaagattcattgccggatcttgttggttctattacaaaatgtgctttgg |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37826788 |
gtcacgaaaaacttaacgacgacgaacaccttgctacgacgtcgccaccttgaagattcattgccggatcttgttggttctattacaaaatgtgctttgg |
37826887 |
T |
|
| Q |
318 |
tggttcgcaccgtttcacatttgtacttttcgttttggttctaaaaaccactataggcacaaccacggtggtcggttacttttcgatttgtgacttcaca |
417 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37826888 |
tggttcgcactgtttcacatttgtactttttgttttggttctaaaaaccactataggcacaaccacggtggtcggttacttttcgatttgtgacttcaca |
37826987 |
T |
|
| Q |
418 |
gtggtgggtgatgaattggattgagtcggttgccgctgannnnnnncgtttgttcattgctacgatcatggttggcttgaaatagttgttaagcttactt |
517 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37826988 |
gtggtgggtgatgaattggattgagtcagttgccgctgatttttttcgtttgttcattgctacgatcatggttggcttgaaatagttgttaagcttactt |
37827087 |
T |
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| Q |
518 |
tcctttg |
524 |
Q |
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| T |
37827088 |
tcctttg |
37827094 |
T |
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