View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_25 (Length: 205)
Name: NF12718_low_25
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 32377026 - 32377199
Alignment:
| Q |
18 |
caaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctcctt |
117 |
Q |
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| T |
32377026 |
caaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctcctt |
32377125 |
T |
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| Q |
118 |
gttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacctgtgattcttcatct |
191 |
Q |
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| T |
32377126 |
gttgatctttagatacaaatgcgtattttttctcgaagggtttgtctctaacttgaacctgtgattcttcatct |
32377199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 32365341 - 32365514
Alignment:
| Q |
18 |
caaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctcctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32365341 |
caaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctcctt |
32365440 |
T |
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| Q |
118 |
gttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacctgtgattcttcatct |
191 |
Q |
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| T |
32365441 |
gttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacctgtgattcttcatct |
32365514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 36122003 - 36122044
Alignment:
| Q |
62 |
ccaaatgtcaagtattcctccactccatttcggtctattttc |
103 |
Q |
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| T |
36122003 |
ccaaatgtcaagtattccaccactccactttggtctattttc |
36122044 |
T |
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