View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_26 (Length: 205)
Name: NF12718_low_26
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 45245344 - 45245535
Alignment:
| Q |
1 |
aaaagataaatgttccagttctttatcatatcagtcaacaagagcgggaactcttgtcgcgccaaggatgccttgtttgctagcattctgaaactgctct |
100 |
Q |
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| T |
45245344 |
aaaagataaatgttccagttctttatcatatcagtcaacaagagcgggaactcttgtcgcgtcaaggatgccttgtttgctagcattctgaaactgctct |
45245443 |
T |
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| Q |
101 |
acttaagtttgaactttgaaatgtgagatgttttttgttttcgaatttacttcttttagaatacttcttgatgtaacacacttttctctgct |
192 |
Q |
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| T |
45245444 |
acttaagtttgaactttgaagtgtaagatgttttttgttttcgaatttacttcttttagaatacttcttgttgtaacacacttttctctgct |
45245535 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 51121226 - 51121305
Alignment:
| Q |
72 |
cttgtttgctagcattctgaaactgctctacttaagtttgaacttt-gaaatgtgagatgttttttgttttcgaatttac |
150 |
Q |
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| T |
51121226 |
cttgtttgctagcattctgaggctgctctgtggaagtttgaacttttgaaatgtaagatgttttttgttttcaaatttac |
51121305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 18315518 - 18315572
Alignment:
| Q |
46 |
gggaactcttgtcgcgccaaggatgccttgtttgctagcattctgaaactgctct |
100 |
Q |
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| T |
18315518 |
gggaactcttctcgcgtcaaagatgccttgtttgctagcattctcaaactactct |
18315572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 27922280 - 27922208
Alignment:
| Q |
63 |
caaggatgccttgtttgctagcattctgaaactgctctacttaagtttgaactttgaaatgtgagatgttttt |
135 |
Q |
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| T |
27922280 |
caaggatgccttgtttgctagcattgttgaagtcttctgctgaagtttgagctctgaaatgtaagatgttttt |
27922208 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 1553051 - 1553122
Alignment:
| Q |
46 |
gggaactcttgtcgcgccaaggatgccttgtttgctagcattctgaaactgctctacttaagtttgaacttt |
117 |
Q |
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| T |
1553051 |
gggaactcttctcgcatcaaggatgtcttgtttgctagtattccaaaactactcttctgaagtttgaacttt |
1553122 |
T |
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