View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_27 (Length: 203)
Name: NF12718_low_27
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 5035935 - 5035758
Alignment:
| Q |
11 |
gaagcagagaaaatagcagcaacagaggaaaaccctaagaaacgaaaaatgggaacagaaacagaagcaacacgttcaaatttaccagaggatttatggg |
110 |
Q |
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| T |
5035935 |
gaagcagagaaaatagcagcaacagaggaaaaccctaagaaacgaaaaatgggaacagaaacagaagcaacacgttcaaatttaccagaggatttatggg |
5035836 |
T |
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| Q |
111 |
aacacattttcaaattcctcaacgacgaggagaacaacacattcaaccttcttcgtcctaatgggaatctaggttttg |
188 |
Q |
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| T |
5035835 |
aaaacatcttcaaattcctcaacgacgaggagaacaacacattcaaacttcttcgtcctaatgggaatctaggttttg |
5035758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 2526003 - 2525894
Alignment:
| Q |
78 |
caacacgttcaaatttaccagaggatttatgggaacacattttcaaattcctcaacgacgaggagaacaacacattcaaccttcttcgtcctaatgggaa |
177 |
Q |
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| T |
2526003 |
caacacgttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgacgaggacaacaacaccttcaaccttcttcgtcttgatgggaa |
2525904 |
T |
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| Q |
178 |
tctaggtttt |
187 |
Q |
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| T |
2525903 |
tataggtttt |
2525894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 2536737 - 2536651
Alignment:
| Q |
78 |
caacacgttcaaatttaccagaggatttatgggaacacattttcaaattcctcaacgacgaggagaacaacacattcaaccttcttc |
164 |
Q |
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| T |
2536737 |
caacacgttcatatttaccagaggagttatgggaatacatcttcaaatttctcaaccacgaggacagcaacaccttcagccttcttc |
2536651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 2625296 - 2625348
Alignment:
| Q |
84 |
gttcaaatttaccagaggatttatgggaacacattttcaaattcctcaacgac |
136 |
Q |
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| T |
2625296 |
gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgac |
2625348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 2491320 - 2491249
Alignment:
| Q |
78 |
caacacgttcaaatttaccagaggatttatgggaacacattttcaaattcctcaacgacgaggagaacaaca |
149 |
Q |
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| T |
2491320 |
caacacgttcatgtttaccagagaagttatgggaacacatcctcaaattcctgaacgacgaggacaacaaca |
2491249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 2467738 - 2467679
Alignment:
| Q |
77 |
gcaacacgttcaaatttaccagaggatttatgggaacacattttcaaattcctcaacgac |
136 |
Q |
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| T |
2467738 |
gcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac |
2467679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 5101944 - 5102005
Alignment:
| Q |
77 |
gcaacacgttcaaatttaccagaggatttatgggaacacattttcaaattcctcaacgacga |
138 |
Q |
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| T |
5101944 |
gcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga |
5102005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 2486510 - 2486430
Alignment:
| Q |
55 |
aaaaatgggaacagaaacagaagcaacacgttcaaatttaccagaggatttatgggaacacattttcaaattcctcaacga |
135 |
Q |
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|||||||| ||||| ||||||||||||| | || |||| |||||||| |||||||| | || || |||||||||||||| |
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| T |
2486510 |
aaaaatggcaacagcaacagaagcaacatgctcgtatttcccagaggaattatgggagcgaatctttaaattcctcaacga |
2486430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 2519422 - 2519366
Alignment:
| Q |
84 |
gttcaaatttaccagaggatttatgggaacacattttcaaattcctcaacgacgagg |
140 |
Q |
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| T |
2519422 |
gttcatatttaccggaggagttatgggagcgcattgtcaagttcctcaacgacgagg |
2519366 |
T |
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