View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12718_low_7 (Length: 428)

Name: NF12718_low_7
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12718_low_7
NF12718_low_7
[»] chr7 (15 HSPs)
chr7 (11-413)||(23864392-23864793)
chr7 (11-205)||(23860846-23861040)
chr7 (11-157)||(23856804-23856950)
chr7 (14-157)||(23843715-23843858)
chr7 (38-115)||(23853290-23853367)
chr7 (38-115)||(23855813-23855890)
chr7 (38-157)||(23850857-23850976)
chr7 (27-157)||(23840003-23840133)
chr7 (20-157)||(23801011-23801148)
chr7 (17-105)||(23805770-23805858)
chr7 (18-157)||(23815642-23815781)
chr7 (15-105)||(23827314-23827404)
chr7 (14-105)||(23821088-23821179)
chr7 (24-105)||(23790155-23790236)
chr7 (15-95)||(23796786-23796866)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 23864392 - 23864793
Alignment:
Q  11 caaagggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgc 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864392 caaagggatccaaaaagctatgaacacagcagaaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgc 23864491  T
Q  111 agagctccagttgattcttcaatattcttctcgcgctctttctcatcgttaaaagcataaacagctttcaatgtaggagtcgcaatctgatcattacaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864492 agagctccagttgattcttcaatattcttctcgcgctctttctcatcgttaaaagcataaacagctttcaatgtaggagtcgcaatctgatcattacaaa 23864591  T
Q  211 aatttgaacatttataattagtcatttttacgttagaaaaataatcaacgaaacattatttagatattctgctttcgaagtgatttcgatttgggattcg 310  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23864592 aatttgaacatttataattagttatttttacgttagaaaaataatcaacgaaacattatttagatattctgctttcgaagtgatttcgatttgggattca 23864691  T
Q  311 acatcaacatnnnnnnnnnnnnttatgttcgtgcatagaaattgtaacgtgactgcaattaaagatacaacaaccacatttgagtgcaaatgtctgtgat 410  Q
    ||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23864692 acatcaacataaaaaataaaaa-tatgttcgtgcatagaaattgtaacgtgactgcaattaaagatacaacaaccacatttgagtgcaaatgtctgtgat 23864790  T
Q  411 atc 413  Q
    |||    
T  23864791 atc 23864793  T

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Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 23860846 - 23861040
Alignment:
Q  11 caaagggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||| |||||| ||||||||||||||| |||||||||    
T  23860846 caaagggatccaaaaagctatgaacacagcagcaatatccacaaagttaatctcttctcccccaaagtacttgttcttcagctcattctcaagaatctgc 23860945  T
Q  111 agagctccagttgattcttcaatattcttctcgcgctctttctcatcgttaaaagcataaacagctttcaatgtaggagtcgcaatctgatcatt 205  Q
    |||||  | ||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||| |||| ||  ||| |||||||||||||    
T  23860946 agagcctcggttgattcttcaacattcttctggcgctccttctcatcgttaacagcataaacagctttgaatgaagaggtcacaatctgatcatt 23861040  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 23856804 - 23856950
Alignment:
Q  11 caaagggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgc 110  Q
    |||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||| || ||||||||||||||||||| ||||||||| ||||||||     
T  23856804 caaagggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaacttgtccttcaactcattctcaagaatctgt 23856903  T
Q  111 agagctccagttgattcttcaatattcttctcgcgctctttctcatc 157  Q
    |||||  || ||| | |||||| ||||||||||||||||||||||||    
T  23856904 agagcctcaattgttccttcaacattcttctcgcgctctttctcatc 23856950  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 23843715 - 23843858
Alignment:
Q  14 agggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcaga 113  Q
    ||||| |||||| |||| ||| |||||||||||||| |||||   || ||| ||||| |||||| |||||||||||||||||||||| ||||  || |||    
T  23843715 agggacccaaaatgctacgaaaacagcagcaatatcgacaaagttaaactcttctcctccaaagtacttgtccttcagctcattctcaagaaagtgaaga 23843814  T
Q  114 gctccagttgattcttcaatattcttctcgcgctctttctcatc 157  Q
    ||  | |||| |||||||||||||||||||||||||||||||||    
T  23843815 gcctcggttgcttcttcaatattcttctcgcgctctttctcatc 23843858  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 23853367 - 23853290
Alignment:
Q  38 agcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcagagc 115  Q
    |||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  23853367 agcagcaatatccacaaagctaatctcctctcctccaaagaacttgtccttcagctcattctcaagaaactgcagagc 23853290  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 23855890 - 23855813
Alignment:
Q  38 agcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcagagc 115  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||| |||| |||||||||    
T  23855890 agcagcaatatccacaaaaccaatctcttctcctccaaagaacttgtcattcagcttattctcaagaaactgcagagc 23855813  T

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Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 23850976 - 23850857
Alignment:
Q  38 agcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcagagctccagttgattcttcaatattc 137  Q
    |||||||||||||||||| || || || ||||| ||||||||||||||||||||||||||||| |||| |||||||||  |   | ||||||||  |  |    
T  23850976 agcagcaatatccacaaagcctatttcttctcctccaaagaacttgtccttcagctcattctcaagaaactgcagagcctcgaataattcttcacgagcc 23850877  T
Q  138 ttctcgcgctctttctcatc 157  Q
    ||||||||||||||||||||    
T  23850876 ttctcgcgctctttctcatc 23850857  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 23840003 - 23840133
Alignment:
Q  27 gctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcagagctccagttgatt 126  Q
    |||| ||| ||||||||||||||||||||   || ||| ||||| |||||| ||||  |||||||||||||||  |||| ||| |||||  |||||| ||    
T  23840003 gctacgaaaacagcagcaatatccacaaagttaaactcttctcctccaaagtacttacccttcagctcattctgaagaaactgaagagcctcagttgttt 23840102  T
Q  127 cttcaatattcttctcgcgctctttctcatc 157  Q
    |||| | ||||||||||||||||||||||||    
T  23840103 cttcgacattcttctcgcgctctttctcatc 23840133  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 23801011 - 23801148
Alignment:
Q  20 ccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcagagctcca 119  Q
    |||||||| ||||| |||||||||||| || ||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||||  || |||||  |     
T  23801011 ccaaaaagatatgaccacagcagcaatgtcaacaaaaccaatatcctccccaccaaagaatttgtccttgagctcattctcaagaaaatgaagagcctct 23801110  T
Q  120 gttgattcttcaatattcttctcgcgctctttctcatc 157  Q
     ||| ||| |||||| ||||||| || |||||||||||    
T  23801111 tttgtttcctcaatactcttctcacgttctttctcatc 23801148  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 23805770 - 23805858
Alignment:
Q  17 gatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaa 105  Q
    ||||||||||| ||||| |||||||||||| || ||||||||||| |||||||| |||||||| ||||| || ||||||||||| ||||    
T  23805770 gatccaaaaagatatgatcacagcagcaatgtcaacaaaaccaatatcctctccaccaaagaatttgtctttgagctcattctcaagaa 23805858  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 23815642 - 23815781
Alignment:
Q  18 atccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaatctgcagagctc 117  Q
    ||||||||||||||||  || || ||||| || ||||| ||||||||||| || |||||||| ||||| || ||||||||||| ||||  || |||||      
T  23815642 atccaaaaagctatgagtacggctgcaatgtcaacaaagccaatctcctccccaccaaagaatttgtctttgagctcattctcaagaaattgaagagcct 23815741  T
Q  118 cagttgattcttcaatattcttctcgcgctctttctcatc 157  Q
    |  ||| ||| |||||| ||||||| || |||||||||||    
T  23815742 cttttgtttcctcaatactcttctcacgttctttctcatc 23815781  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 23827314 - 23827404
Alignment:
Q  15 gggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaa 105  Q
    |||| ||||||||||||||| || ||||||||||| ||||  |||||||| ||||| ||||||||  | ||||| ||||||||||| ||||    
T  23827314 gggaaccaaaaagctatgaaaactgcagcaatatcaacaattccaatctcttctccaccaaagaaagtctccttaagctcattctcaagaa 23827404  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 23821088 - 23821179
Alignment:
Q  14 agggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaa 105  Q
    ||||| ||||||||||||||| || |||| ||| || | ||  ||||| || ||||| ||||||||||||||||| ||||||||||| ||||    
T  23821088 agggaaccaaaaagctatgaagaccgcagtaatgtcaataagtccaatatcatctccaccaaagaacttgtccttgagctcattctcaagaa 23821179  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 23790155 - 23790236
Alignment:
Q  24 aaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctcattctcgagaa 105  Q
    |||||||||||  | |||| ||| || ||||  |||||||| ||||| |||||||| |||||||| ||||||||||| ||||    
T  23790155 aaagctatgaaggctgcagtaatgtcaacaatgccaatctcatctccaccaaagaatttgtccttgagctcattctctagaa 23790236  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 23796786 - 23796866
Alignment:
Q  15 gggatccaaaaagctatgaacacagcagcaatatccacaaaaccaatctcctctcccccaaagaacttgtccttcagctca 95  Q
    |||| |||||||| |||||| ||  ||| ||| || ||||  |||||||| ||||| ||||||||||||||||| ||||||    
T  23796786 gggagccaaaaagatatgaagactccagtaatgtcaacaaggccaatctcttctcctccaaagaacttgtccttgagctca 23796866  T

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