View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12718_low_8 (Length: 422)

Name: NF12718_low_8
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12718_low_8
NF12718_low_8
[»] chr4 (4 HSPs)
chr4 (11-401)||(1313028-1313418)
chr4 (263-320)||(55084492-55084549)
chr4 (219-253)||(55084492-55084526)
chr4 (155-208)||(46797097-46797150)
[»] chr3 (3 HSPs)
chr3 (155-194)||(41057252-41057291)
chr3 (202-257)||(52267430-52267485)
chr3 (155-251)||(25925769-25925865)
[»] chr8 (3 HSPs)
chr8 (275-333)||(8060658-8060716)
chr8 (175-240)||(14926936-14927001)
chr8 (155-209)||(24326113-24326167)
[»] chr6 (1 HSPs)
chr6 (199-250)||(13908491-13908542)
[»] chr5 (5 HSPs)
chr5 (200-251)||(3504771-3504822)
chr5 (202-251)||(14331394-14331443)
chr5 (155-247)||(443966-444058)
chr5 (155-239)||(11684453-11684536)
chr5 (202-250)||(31688067-31688115)
[»] scaffold0159 (1 HSPs)
scaffold0159 (176-257)||(27022-27103)
[»] chr7 (2 HSPs)
chr7 (204-253)||(12234885-12234934)
chr7 (205-257)||(5628564-5628615)
[»] chr2 (2 HSPs)
chr2 (176-257)||(5781690-5781771)
chr2 (204-248)||(43635097-43635141)


Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 1313418 - 1313028
Alignment:
Q  11 cacagataataacttgaaaaggtgaaattgatttt-tacaaccacatgtgtcgatattgtacaaatatcaaacactcgtacagaacttccatttgaagtg 109  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1313418 cacagataataacttgaaaaggtgaaattgattttctacaatcacatgtgtcgatattgtacaaatatcaaacactcgtacagaacttccatttgaagtg 1313319  T
Q  110 tacagtttgtaacatatcatggagtcaggcctttttagatagcagatttgagcttatctacatgaataagcacttgtgagactgtgttggaaagcttatg 209  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  1313318 tacagtttgtaacatatcatggagtcaggcctttttagataacagatttgagcttatctacatgtataagcacttgtgagactgt--tggaaagcttatg 1313221  T
Q  210 acttgtctgtaagctggtttcagcttattttcaaaagctctctatgattgccgtaagctggtttgagcttattttcaaaagctctctaagattgccaatg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1313220 acttgtctgtaagctggtttcagcttattttcaaaagctctctatgattggcgtaagctggtttgagcttattttcaaaagctctctaagattgccaatg 1313121  T
Q  310 aaaacatcttataagttataactttacaacgcataaaacaatttgacgatacgataa-aaaatcatgttataagtacttaattaagatgttta 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  1313120 aaaacatcttataagttataactttacaacgcataaaacaatttgacgatacgataaaaaaatcatgttataagcacttaattaagatgttta 1313028  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 55084492 - 55084549
Alignment:
Q  263 taagctggtttgagcttattttcaaaagctctctaagattgccaatgaaaacatctta 320  Q
    ||||||||||| |||||||||||| |||||||||||||| ||  ||||||||| ||||    
T  55084492 taagctggtttcagcttattttcataagctctctaagatagctcatgaaaacaactta 55084549  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 55084492 - 55084526
Alignment:
Q  219 taagctggtttcagcttattttcaaaagctctcta 253  Q
    |||||||||||||||||||||||| ||||||||||    
T  55084492 taagctggtttcagcttattttcataagctctcta 55084526  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 46797150 - 46797097
Alignment:
Q  155 atttgagcttatctacatgaataagcacttgtgagactgtgttggaaagcttat 208  Q
    |||||||||||| ||| || |||||||||||||||||||| |  ||||||||||    
T  46797150 atttgagcttatttacttgtataagcacttgtgagactgtttatgaaagcttat 46797097  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 41057291 - 41057252
Alignment:
Q  155 atttgagcttatctacatgaataagcacttgtgagactgt 194  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  41057291 atttgagcttatctacatgcataagcacttgtgagactgt 41057252  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 52267485 - 52267430
Alignment:
Q  202 agcttatgacttgtctgtaagctggtttcagcttattttcaaaagctctctatgat 257  Q
    |||||||||||||| | ||||||||||| ||||||| |||| |||||||| |||||    
T  52267485 agcttatgacttgtttttaagctggtttaagcttatcttcataagctctccatgat 52267430  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 25925865 - 25925769
Alignment:
Q  155 atttgagcttatctacatgaataagcacttgtgagactgtgttggaaagcttatgacttgtctgtaagctggtttcagcttattttcaaaagctctc 251  Q
    |||||| |||||||||  | |||||||||||| | ||||| || || | |||||||| |||   ||||||| ||||| |||||||||| ||||||||    
T  25925865 atttgaacttatctactggcataagcacttgtaacactgttttagagaacttatgacatgttcataagctgttttcaacttattttcataagctctc 25925769  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 8060716 - 8060658
Alignment:
Q  275 agcttattttcaaaagctctctaagattgccaatgaaaacatcttataagttataactt 333  Q
    ||||||||| || |||||||||| ||||||  ||||||||| |||||||||||||||||    
T  8060716 agcttatttccataagctctctaggattgcttatgaaaacagcttataagttataactt 8060658  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 14926936 - 14927001
Alignment:
Q  175 ataagcacttgtgagactgtgttggaaagcttatgacttgtctgtaagctggtttcagcttatttt 240  Q
    |||||||||||||||||||| |  || ||||| |||| ||||||||||||| |||||||| |||||    
T  14926936 ataagcacttgtgagactgtttgagagagcttgtgacgtgtctgtaagctgttttcagctaatttt 14927001  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 24326167 - 24326113
Alignment:
Q  155 atttgagcttatctacatgaataagcacttgtgagactgtgttggaaagcttatg 209  Q
    ||||||||||||||||  | |||||||||||||||||||| | ||| ||||||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagcttatg 24326113  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 13908542 - 13908491
Alignment:
Q  199 gaaagcttatgacttgtctgtaagctggtttcagcttattttcaaaagctct 250  Q
    ||||||||||||| |||  |||||||| |||||||||||||||| |||||||    
T  13908542 gaaagcttatgacatgttcgtaagctgttttcagcttattttcataagctct 13908491  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 3504822 - 3504771
Alignment:
Q  200 aaagcttatgacttgtctgtaagctggtttcagcttattttcaaaagctctc 251  Q
    |||||||||||| ||| ||||||||| ||||||||||||| || ||||||||    
T  3504822 aaagcttatgacatgtttgtaagctgttttcagcttatttacataagctctc 3504771  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 14331443 - 14331394
Alignment:
Q  202 agcttatgacttgtctgtaagctggtttcagcttattttcaaaagctctc 251  Q
    |||||||||| ||||  ||||||| |||||||||||||||| ||||||||    
T  14331443 agcttatgacatgtccataagctgatttcagcttattttcataagctctc 14331394  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 444058 - 443966
Alignment:
Q  155 atttgagcttatctacatgaataagcacttgtgagactgtgttggaaagcttatgacttgtctgtaagctggtttcagcttattttcaaaagc 247  Q
    |||||||||||||||  || |||| ||||||||||||||| | ||| |  | ||||| ||| ||||||||| || |||||||| | |||||||    
T  444058 atttgagcttatctaattgcataaacacttgtgagactgtttgggagaagtaatgacatgtttgtaagctgtttccagcttatctccaaaagc 443966  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 11684536 - 11684453
Alignment:
Q  155 atttgagcttatctacatgaataagcacttgtgagactgtgttggaaagcttatgacttgtctgtaagctggtttcagcttattt 239  Q
    ||||||||||||||||    || ||||||||||||||||| |  |||||||||||||  || ||||||||| ||||| |||||||    
T  11684536 atttgagcttatctactgtcatgagcacttgtgagactgtttaagaaagcttatgacacgt-tgtaagctgttttcaacttattt 11684453  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 31688115 - 31688067
Alignment:
Q  202 agcttatgacttgtctgtaagctggtttcagcttattttcaaaagctct 250  Q
    |||||||||||||||| ||||||  ||||| |||||||||| |||||||    
T  31688115 agcttatgacttgtctataagctattttcaacttattttcataagctct 31688067  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 27103 - 27022
Alignment:
Q  176 taagcacttgtgagactgtgttggaaagcttatgacttgtctgtaagctggtttcagcttattttcaaaagctctctatgat 257  Q
    ||||||||||||| ||||| |  || |||||||||| |||   ||| ||| ||||||||||||| || ||||||||||||||    
T  27103 taagcacttgtgacactgtttgcgagagcttatgacatgtgcataaactgttttcagcttatttccataagctctctatgat 27022  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 12234885 - 12234934
Alignment:
Q  204 cttatgacttgtctgtaagctggtttcagcttattttcaaaagctctcta 253  Q
    |||||||| ||||| ||||||| ||||||||||||| || ||||||||||    
T  12234885 cttatgacatgtctataagctgttttcagcttatttccataagctctcta 12234934  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 5628564 - 5628615
Alignment:
Q  205 ttatgacttgtctgtaagctggtttcagcttattttcaaaagctctctatgat 257  Q
    ||||||| ||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  5628564 ttatgacatgtctataagctg-tttcagcttattttcataagctctctgtgat 5628615  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 5781771 - 5781690
Alignment:
Q  176 taagcacttgtgagactgtgttggaaagcttatgacttgtctgtaagctggtttcagcttattttcaaaagctctctatgat 257  Q
    ||||||||||||| ||||| |  || |||||||||| |||   ||| ||| ||||||||||||| || ||||||||||||||    
T  5781771 taagcacttgtgacactgtttgcgagagcttatgacatgtgcataaactgttttcagcttatttccataagctctctatgat 5781690  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 43635097 - 43635141
Alignment:
Q  204 cttatgacttgtctgtaagctggtttcagcttattttcaaaagct 248  Q
    |||||||| ||||||||||||| ||| |||||||||||| |||||    
T  43635097 cttatgacatgtctgtaagctgttttaagcttattttcataagct 43635141  T

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