View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_9 (Length: 421)
Name: NF12718_low_9
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 404
Target Start/End: Original strand, 11236459 - 11236837
Alignment:
| Q |
13 |
gagaccgtgacccattgagagattagggattttatacacttagtgagtaagattagagagggattagggtccatgatagattagatagtaaggaatttaa |
112 |
Q |
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| T |
11236459 |
gagaccgtgacccattgagagattagggattttatacacttagtgagtaagattagagaaagattagggtccatgatagattagatattaaggaatttaa |
11236558 |
T |
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| Q |
113 |
gtcctgggttcagtgattagttttgagagattctggattttagggtttgagttcagtgattaactgtaccatttctctatcagtttttaatatttatttt |
212 |
Q |
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| T |
11236559 |
gtcctgggttcagtgattaattttgagagatttgggattttagggtttgagttcagtgattaactgtaccatttctctatcagtttttaatatttatttt |
11236658 |
T |
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| Q |
213 |
catctaattttatttgttcagtgattaacttcatatctctctattatttgtttaattctcaggtgaagtactaaagagggcttaaaatcatatctctcta |
312 |
Q |
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| T |
11236659 |
catctaatttta-------------taacttcacatctctctattatttgtttcattctcaggtgaagtactaaagagggcttaaaatcatatctctcta |
11236745 |
T |
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| Q |
313 |
atgcatatggtggataaataaaaatattatgactaacttgtttactgatgtgatgtggtgaaactaacttcaaggcgtattgtggttctaat |
404 |
Q |
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| T |
11236746 |
atgcatatggtggataaataaaaatattatgactaacttgtttactgatgtgatgtggtgaaactaactccaaggcgtattgtgattctaat |
11236837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 23482479 - 23482308
Alignment:
| Q |
13 |
gagaccgtgacccattgagagattagggattttatacacttagtgagtaagattagagagggattagggtccatgatagattagatagtaaggaatttaa |
112 |
Q |
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| T |
23482479 |
gagaccgtgacccattgagagattagggattttatacacttagtgagtaagattagagagagattagggtccatgatagattagatagtaaggaatttaa |
23482380 |
T |
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| Q |
113 |
gtcctgggttcagtgattagttttgagagattctggattttagggtttgagttcagtgattaactgtaccatttct |
188 |
Q |
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| T |
23482379 |
gtcctgggttcagtgattaattttgagagattctggattttagggtttgagttcag----taactgtaccatttct |
23482308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 404
Target Start/End: Complemental strand, 30254694 - 30254615
Alignment:
| Q |
325 |
gataaataaaaatattatgactaacttgtttactgatgtgatgtggtgaaactaacttcaaggcgtattgtggttctaat |
404 |
Q |
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| T |
30254694 |
gatagatagaaatattatcactaacttgtttactgatgtgatgtggtgaaaataacttcaaggcatattttgattctaat |
30254615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 30255044 - 30254990
Alignment:
| Q |
147 |
ggattttagggtttgagttcagtgattaactgtaccatttctctatcagttttta |
201 |
Q |
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| T |
30255044 |
ggattatagagtttgagttcagtgattaattgtgccatttctctatcatttttta |
30254990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 30254979 - 30254926
Alignment:
| Q |
238 |
taacttcatatctctctattatttgtttaattctcaggtgaagtactaaagagg |
291 |
Q |
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| T |
30254979 |
taacttcatatcattctattttttgtttaaatctcaggtgatgtactcaagagg |
30254926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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