View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12719_high_17 (Length: 220)
Name: NF12719_high_17
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 30264381 - 30264171
Alignment:
| Q |
1 |
gctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264381 |
gctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatat |
30264282 |
T |
|
| Q |
101 |
tctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaaggttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30264281 |
tctcccttttcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgaggaaggttc |
30264182 |
T |
|
| Q |
201 |
acaggttctgc |
211 |
Q |
| |
|
| || |||||| |
|
|
| T |
30264181 |
agagtttctgc |
30264171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30287807 - 30288017
Alignment:
| Q |
1 |
gctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287807 |
gctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatat |
30287906 |
T |
|
| Q |
101 |
tctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaaggttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30287907 |
tctcccttttcaattcaatctctgattttggatggagtatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgaggaaggttc |
30288006 |
T |
|
| Q |
201 |
acaggttctgc |
211 |
Q |
| |
|
| || |||||| |
|
|
| T |
30288007 |
agagtttctgc |
30288017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 30304340 - 30304146
Alignment:
| Q |
3 |
tgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattc |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30304340 |
tgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattc |
30304241 |
T |
|
| Q |
103 |
tcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
197 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
30304240 |
ccctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30304146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 30271275 - 30271079
Alignment:
| Q |
1 |
gctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
30271275 |
gctgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccatat |
30271176 |
T |
|
| Q |
101 |
tctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
197 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
30271175 |
tctcctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30271079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 30280914 - 30281110
Alignment:
| Q |
1 |
gctgatgatccttctcttcctttgtcttttcctaaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
30280914 |
gctgatgacccttctcttcctttgtcttttccttcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccatat |
30281013 |
T |
|
| Q |
101 |
tctcccttttcaattcaatctctgattttggatggagcatattgaaaagttcaataattgaagatgataaatcacctatatggaatggtgacgaagg |
197 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
30281014 |
tctcctttttcaattccttctctgattttggatggagcatagccaaaagctcaatgcttaaagatgacaaaacacctatatggaatggtgaggaagg |
30281110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30032333 - 30032301
Alignment:
| Q |
1 |
gctgatgatccttctcttcctttgtcttttcct |
33 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
30032333 |
gctgatgatccttctcttcctttatcttttcct |
30032301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2311456 - 2311488
Alignment:
| Q |
1 |
gctgatgatccttctcttcctttgtcttttcct |
33 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
2311456 |
gctgatgatccatctcttcctttgtcttttcct |
2311488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University