View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12719_high_2 (Length: 582)

Name: NF12719_high_2
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12719_high_2
NF12719_high_2
[»] chr3 (37 HSPs)
chr3 (1-564)||(44716-45279)
chr3 (424-564)||(32546678-32546815)
chr3 (423-564)||(53785592-53785730)
chr3 (423-561)||(52741598-52741733)
chr3 (423-564)||(26772641-26772779)
chr3 (427-564)||(26856852-26856986)
chr3 (428-565)||(39583320-39583454)
chr3 (423-555)||(37133085-37133214)
chr3 (428-564)||(13582393-13582526)
chr3 (423-564)||(44198650-44198788)
chr3 (431-562)||(38670974-38671102)
chr3 (432-564)||(4763888-4764016)
chr3 (428-541)||(5338552-5338659)
chr3 (420-535)||(38978882-38978994)
chr3 (423-534)||(3443398-3443506)
chr3 (427-534)||(21552577-21552685)
chr3 (423-499)||(38146001-38146077)
chr3 (429-535)||(52411983-52412086)
chr3 (430-535)||(25094665-25094767)
chr3 (423-497)||(51234563-51234637)
chr3 (433-539)||(4472970-4473073)
chr3 (462-564)||(4669788-4669887)
chr3 (428-499)||(25324974-25325045)
chr3 (482-564)||(26276498-26276577)
chr3 (423-534)||(49017880-49017984)
chr3 (436-535)||(7257655-7257751)
chr3 (430-499)||(42206012-42206081)
chr3 (423-499)||(37992278-37992353)
chr3 (435-499)||(46940871-46940935)
chr3 (423-490)||(7900812-7900879)
chr3 (428-470)||(4669088-4669130)
chr3 (446-499)||(3643096-3643149)
chr3 (455-483)||(4190826-4190854)
chr3 (455-483)||(4190998-4191026)
chr3 (423-494)||(7502098-7502167)
chr3 (510-562)||(50446150-50446202)
chr3 (423-499)||(54508470-54508546)
[»] chr1 (34 HSPs)
chr1 (12-404)||(21358326-21358711)
chr1 (423-564)||(21472886-21473024)
chr1 (423-563)||(24177597-24177734)
chr1 (423-564)||(22346778-22346916)
chr1 (447-564)||(868513-868625)
chr1 (423-562)||(34644451-34644587)
chr1 (423-563)||(28041213-28041350)
chr1 (423-558)||(20259883-20260015)
chr1 (427-564)||(7213126-7213267)
chr1 (423-555)||(31737409-31737537)
chr1 (423-557)||(45659734-45659863)
chr1 (423-554)||(2898595-2898723)
chr1 (467-564)||(30688440-30688534)
chr1 (423-559)||(2764367-2764500)
chr1 (423-484)||(29169879-29169940)
chr1 (482-564)||(5453978-5454057)
chr1 (428-499)||(4862080-4862151)
chr1 (497-563)||(1114025-1114091)
chr1 (497-555)||(28493488-28493546)
chr1 (500-564)||(19035362-19035426)
chr1 (423-499)||(38731554-38731630)
chr1 (465-562)||(21934262-21934357)
chr1 (423-555)||(47459575-47459703)
chr1 (428-483)||(35387747-35387802)
chr1 (472-564)||(4611072-4611161)
chr1 (452-559)||(45835301-45835404)
chr1 (423-499)||(18616239-18616315)
chr1 (497-559)||(17077973-17078035)
chr1 (520-564)||(44420595-44420639)
chr1 (424-562)||(48841169-48841304)
chr1 (444-487)||(11128361-11128404)
chr1 (440-497)||(6670208-6670265)
chr1 (475-554)||(29170322-29170398)
chr1 (428-472)||(42919832-42919876)
[»] chr8 (34 HSPs)
chr8 (423-564)||(22589423-22589560)
chr8 (423-564)||(38815177-38815315)
chr8 (423-564)||(37514104-37514242)
chr8 (423-564)||(18804496-18804633)
chr8 (430-556)||(39434558-39434681)
chr8 (423-548)||(3187869-3187990)
chr8 (423-528)||(24124947-24125049)
chr8 (423-558)||(4699760-4699891)
chr8 (423-544)||(6592479-6592596)
chr8 (423-497)||(3821171-3821245)
chr8 (430-515)||(3863246-3863331)
chr8 (428-554)||(6618178-6618300)
chr8 (423-499)||(43823934-43824010)
chr8 (459-532)||(24451036-24451105)
chr8 (428-486)||(35740077-35740135)
chr8 (423-499)||(9259378-9259454)
chr8 (500-564)||(18596759-18596823)
chr8 (423-475)||(40223489-40223541)
chr8 (468-556)||(8882235-8882320)
chr8 (428-473)||(500199-500244)
chr8 (460-534)||(4066758-4066829)
chr8 (423-499)||(25021900-25021976)
chr8 (441-539)||(42659135-42659230)
chr8 (517-564)||(15566162-15566209)
chr8 (428-499)||(28196137-28196208)
chr8 (423-477)||(8115779-8115833)
chr8 (423-497)||(39671258-39671332)
chr8 (428-535)||(5329693-5329797)
chr8 (423-499)||(4073479-4073555)
chr8 (428-499)||(121812-121883)
chr8 (428-499)||(3825580-3825651)
chr8 (436-487)||(12598162-12598213)
chr8 (497-557)||(24320227-24320287)
chr8 (498-562)||(24350880-24350944)
[»] scaffold0009 (1 HSPs)
scaffold0009 (423-564)||(102989-103127)
[»] chr7 (40 HSPs)
chr7 (423-564)||(21326924-21327062)
chr7 (423-560)||(19277178-19277314)
chr7 (423-554)||(24527482-24527610)
chr7 (423-564)||(45613928-45614066)
chr7 (423-557)||(982839-982970)
chr7 (423-564)||(25187017-25187155)
chr7 (423-534)||(48539094-48539202)
chr7 (423-564)||(4501142-4501280)
chr7 (429-559)||(28517379-28517506)
chr7 (428-548)||(41117861-41117978)
chr7 (423-533)||(27521385-27521492)
chr7 (423-564)||(5825156-5825294)
chr7 (423-534)||(5972302-5972410)
chr7 (423-564)||(40726566-40726704)
chr7 (423-563)||(22197871-22198007)
chr7 (423-563)||(22239814-22239950)
chr7 (423-497)||(43856821-43856895)
chr7 (465-564)||(27027758-27027854)
chr7 (428-496)||(10905066-10905134)
chr7 (459-564)||(45003019-45003121)
chr7 (423-554)||(34772675-34772803)
chr7 (428-514)||(30216149-30216232)
chr7 (428-534)||(42295275-42295378)
chr7 (423-565)||(32584482-32584622)
chr7 (428-499)||(44525930-44526001)
chr7 (423-535)||(23037457-23037566)
chr7 (469-563)||(45974731-45974822)
chr7 (517-564)||(38766207-38766254)
chr7 (524-564)||(38832185-38832225)
chr7 (448-558)||(43333941-43334048)
chr7 (428-555)||(9281222-9281351)
chr7 (428-555)||(9292193-9292322)
chr7 (112-150)||(40432235-40432273)
chr7 (452-499)||(5714985-5715032)
chr7 (428-487)||(23792969-23793028)
chr7 (459-494)||(38766259-38766294)
chr7 (429-499)||(36558960-36559029)
chr7 (477-564)||(29054732-29054816)
chr7 (423-499)||(6635049-6635125)
chr7 (457-539)||(38839234-38839313)
[»] chr2 (35 HSPs)
chr2 (423-564)||(9685501-9685639)
chr2 (428-564)||(4413157-4413290)
chr2 (423-565)||(41867994-41868132)
chr2 (424-564)||(17344521-17344658)
chr2 (423-563)||(13413235-13413372)
chr2 (424-563)||(18745041-18745177)
chr2 (423-563)||(28224884-28225021)
chr2 (497-557)||(15515304-15515364)
chr2 (423-565)||(19161869-19162008)
chr2 (427-540)||(27502269-27502379)
chr2 (423-494)||(16351930-16352001)
chr2 (428-487)||(20142816-20142875)
chr2 (428-499)||(44686361-44686432)
chr2 (502-564)||(3208406-3208468)
chr2 (463-564)||(27494194-27494292)
chr2 (427-486)||(34814908-34814967)
chr2 (427-562)||(11921300-11921426)
chr2 (439-499)||(23485038-23485098)
chr2 (423-479)||(32029172-32029228)
chr2 (428-499)||(3825671-3825742)
chr2 (423-480)||(7760931-7760988)
chr2 (507-560)||(30602376-30602429)
chr2 (434-499)||(44684955-44685020)
chr2 (423-499)||(2886701-2886776)
chr2 (428-496)||(5532368-5532436)
chr2 (435-555)||(1296175-1296292)
chr2 (510-564)||(41702155-41702209)
chr2 (507-564)||(32612329-32612386)
chr2 (423-488)||(8036568-8036635)
chr2 (496-548)||(42122716-42122768)
chr2 (450-497)||(24765208-24765255)
chr2 (517-547)||(20143122-20143152)
chr2 (454-487)||(20142871-20142904)
chr2 (423-496)||(29808023-29808096)
chr2 (462-499)||(33612670-33612707)
[»] chr4 (44 HSPs)
chr4 (423-564)||(3329879-3330017)
chr4 (423-564)||(39001280-39001418)
chr4 (423-564)||(4419147-4419284)
chr4 (436-564)||(30940831-30940956)
chr4 (423-563)||(34107782-34107919)
chr4 (423-564)||(26521372-26521509)
chr4 (423-557)||(53619476-53619607)
chr4 (431-564)||(16955343-16955473)
chr4 (423-564)||(50001012-50001150)
chr4 (423-541)||(53170418-53170534)
chr4 (423-564)||(600778-600916)
chr4 (424-562)||(23255598-23255733)
chr4 (428-564)||(50464387-50464520)
chr4 (428-564)||(55933551-55933684)
chr4 (476-564)||(31846986-31847071)
chr4 (427-536)||(25504206-25504312)
chr4 (423-555)||(38535655-38535783)
chr4 (427-564)||(50463036-50463167)
chr4 (423-499)||(56462192-56462268)
chr4 (423-500)||(42455693-42455770)
chr4 (509-564)||(40392723-40392778)
chr4 (423-497)||(7536657-7536731)
chr4 (429-564)||(32312803-32312940)
chr4 (467-563)||(50442609-50442702)
chr4 (428-497)||(6865911-6865979)
chr4 (423-499)||(46391400-46391474)
chr4 (434-540)||(48657012-48657115)
chr4 (436-564)||(45661574-45661699)
chr4 (423-499)||(54190937-54191013)
chr4 (423-466)||(747855-747898)
chr4 (449-538)||(18981651-18981735)
chr4 (428-499)||(28739850-28739921)
chr4 (428-499)||(34213565-34213635)
chr4 (446-554)||(8738098-8738203)
chr4 (423-461)||(50483282-50483320)
chr4 (431-535)||(49354160-49354265)
chr4 (428-499)||(132330-132401)
chr4 (423-466)||(712679-712722)
chr4 (426-493)||(46440978-46441045)
chr4 (433-499)||(23233211-23233276)
chr4 (475-547)||(23604990-23605059)
chr4 (497-557)||(2852325-2852385)
chr4 (423-471)||(32755784-32755832)
chr4 (430-494)||(49344232-49344296)
[»] chr5 (28 HSPs)
chr5 (436-564)||(2566194-2566319)
chr5 (423-564)||(42921581-42921718)
chr5 (423-540)||(22188741-22188855)
chr5 (423-564)||(32269883-32270020)
chr5 (423-564)||(35310331-35310469)
chr5 (423-553)||(430496-430623)
chr5 (446-564)||(15292134-15292249)
chr5 (427-564)||(13167000-13167134)
chr5 (423-550)||(14423584-14423703)
chr5 (423-565)||(26212669-26212808)
chr5 (423-563)||(27336579-27336714)
chr5 (428-556)||(25663123-25663248)
chr5 (423-543)||(37873724-37873841)
chr5 (448-547)||(23023495-23023591)
chr5 (423-492)||(38875590-38875659)
chr5 (427-564)||(33692145-33692276)
chr5 (518-564)||(2917539-2917585)
chr5 (442-524)||(15809972-15810052)
chr5 (500-564)||(11005761-11005825)
chr5 (437-524)||(15832985-15833069)
chr5 (423-484)||(34335297-34335358)
chr5 (448-500)||(24113519-24113571)
chr5 (423-555)||(8100446-8100573)
chr5 (443-556)||(15506721-15506831)
chr5 (444-486)||(16017131-16017173)
chr5 (423-495)||(27294387-27294459)
chr5 (428-483)||(23423962-23424017)
chr5 (430-479)||(19260269-19260318)
[»] chr6 (25 HSPs)
chr6 (423-564)||(17249391-17249529)
chr6 (425-543)||(32115622-32115737)
chr6 (423-564)||(33220797-33220935)
chr6 (455-564)||(3137365-3137471)
chr6 (423-532)||(4206682-4206788)
chr6 (423-535)||(959493-959601)
chr6 (428-559)||(34304384-34304512)
chr6 (423-479)||(45763-45819)
chr6 (423-532)||(4166008-4166114)
chr6 (429-563)||(29338171-29338302)
chr6 (497-564)||(7749364-7749431)
chr6 (423-548)||(28625830-28625951)
chr6 (431-544)||(357810-357920)
chr6 (467-564)||(34168804-34168897)
chr6 (430-562)||(34554370-34554498)
chr6 (429-476)||(34415404-34415451)
chr6 (428-499)||(28009078-28009149)
chr6 (127-159)||(24745569-24745601)
chr6 (428-499)||(13398273-13398344)
chr6 (429-499)||(7200627-7200697)
chr6 (429-499)||(31703561-31703631)
chr6 (430-499)||(3714862-3714931)
chr6 (428-492)||(22985873-22985937)
chr6 (428-492)||(23802457-23802521)
chr6 (439-483)||(24016298-24016342)
[»] scaffold0490 (1 HSPs)
scaffold0490 (423-499)||(6279-6355)
[»] scaffold0148 (1 HSPs)
scaffold0148 (423-564)||(33133-33271)
[»] scaffold1768 (1 HSPs)
scaffold1768 (428-535)||(275-379)
[»] scaffold0309 (1 HSPs)
scaffold0309 (497-564)||(5207-5274)
[»] scaffold0470 (1 HSPs)
scaffold0470 (428-554)||(7496-7618)
[»] scaffold0406 (1 HSPs)
scaffold0406 (498-564)||(6771-6837)
[»] scaffold0031 (1 HSPs)
scaffold0031 (440-556)||(49306-49419)
[»] scaffold0244 (1 HSPs)
scaffold0244 (497-558)||(16811-16872)
[»] scaffold0119 (1 HSPs)
scaffold0119 (430-482)||(16068-16120)
[»] scaffold0224 (1 HSPs)
scaffold0224 (428-472)||(18455-18499)


Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 45279 - 44716
Alignment:
Q  1 caataaaagttgcaaaccagcaacacataatgaatcatcaccgtaatgttattttatcaaaaacgatcattaaaaggtctaggaaaattcaaaacagagg 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45279 caataaaagttgaaaaccagcaacacataatgaatcatcaccgtaatgttattttatcaaaaacgatcattaaaagatctaggaaaattcaaaacagagg 45180  T
Q  101 acttttataacaatgttcagcatgaacatcatacaatgttcaccacttttggcactcaaacattcatgaaaatatcaataaaaaatagagacagattcct 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45179 acttttataacaatgttcagcacgaacatcatacaatgttcaccacttttggcactcaaaccttcatgaaaatatcaataaaaaatagagacagattcct 45080  T
Q  201 aacacatcatacatcaaatccgtgcttttactttgaattagttgcgcaaagaatagtgtataaaattgtagacaaaaacagttctcacagaaattccaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45079 aacacatcatacatcaaatccgtgcttttactttgaattagttgcgcacagaatagtgtataaaattgtagacaaaaagagttctcacagaaattccaaa 44980  T
Q  301 aaagagcgtgcaactttagtatctcatttgaaggctcaaaactcatctaatcagtatcaaatttcatataccatttcctgaacatgttagtaattatata 400  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44979 aaagagcatgcaactttagtatctcatttgaaggctcaaaactcatctaatcggtatcaaatttcatataccatttcctgaacatgttagtaattatata 44880  T
Q  401 gactgttcataacaattgtcctgaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtt 500  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44879 gactgctcataacaattgtccagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtttcctaggtccatgaatgttgtt 44780  T
Q  501 gtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44779 gtgttcacaaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 44716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 424 - 564
Target Start/End: Complemental strand, 32546815 - 32546678
Alignment:
Q  424 aggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgc 523  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||| |||||||    
T  32546815 aggctgttgaccttctacatagagttcaaaaagtcatgcatagtaatgtcatgtctcctaggtccatgaatg---ttgtgttcacgaggattggttttgc 32546719  T
Q  524 catccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  32546718 catccaaaaaggtctagcggcgcagcttgttgcccgcttgc 32546678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 53785730 - 53785592
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||| ||||||||| ||||||    
T  53785730 gaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaa---tgttatgtttacgaggattggttttg 53785634  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||| |||||| ||||||| || |||||||||||||||    
T  53785633 ccatccaacaaggtccagcggcgtagcttgttgcccgcttgc 53785592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 423 - 561
Target Start/End: Original strand, 52741598 - 52741733
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |  | |||| ||||||| |||||||||||    
T  52741598 gaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccat---ttatcttgtattcacgaagatttgttttg 52741694  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgct 561  Q
    |||||||||||||||||||| ||||  || |||||||||    
T  52741695 ccatccaaaaaggtctagcgacgcaacttattgcccgct 52741733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 26772779 - 26772641
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| |||||||||||| ||||||| |||| | | ||||||| |||||| ||||||||||||||||||||||||||   ||| |||||||||  |||||    
T  26772779 gaggcagttgaccttctatatagagtacaaaggattatgcataacaatgttatgtctcctaggtccatgaatgttgt---gtttacgaggattgattttg 26772683  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  26772682 ccatccaaaaaggtctagcggcgcagcttgttgcccgcttgc 26772641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 427 - 564
Target Start/End: Original strand, 26856852 - 26856986
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccat 526  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||   | |  |||||||| ||||| ||||    
T  26856852 ctgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgt---gcttgcgaggattggttttaccat 26856948  T
Q  527 ccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||| |||||||||||| ||||||| |||||||    
T  26856949 ccaaaaaggcctagcggcgcagcttgttgctcgcttgc 26856986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 428 - 565
Target Start/End: Original strand, 39583320 - 39583454
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||   ||| ||||| |||||||||  ||||||||||    
T  39583320 tgttgaccttctgcatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggttcatgaa---tgtcgtgtttacgaggattgattttgccatc 39583416  T
Q  528 caaaaaggtctagcggcgcagtttgttgcccgcttgct 565  Q
    ||||||||||||||||||||  |||||| | |||||||    
T  39583417 caaaaaggtctagcggcgcaacttgttgtctgcttgct 39583454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 423 - 555
Target Start/End: Original strand, 37133085 - 37133214
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  |||||||||||   ||| |  |||||| ||||||    
T  37133085 gaggttgttgaccttctacatagagttctaaaggtcatgcatagcaatgtcatgtctcctaagttaatgaatgttgt---gtttataaggattggttttg 37133181  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttg 555  Q
    | |||||||||||||||||||||||||||||||    
T  37133182 cgatccaaaaaggtctagcggcgcagtttgttg 37133214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 428 - 564
Target Start/End: Complemental strand, 13582526 - 13582393
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||   ||||||| |||| ||||  ||| ||||||    
T  13582526 tgttgaccttctacagagagttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatg---ttgtgtttacgaagattgatttagccatc 13582430  T
Q  528 caaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||| |||||| ||| |||| ||||||||||||    
T  13582429 caaaaaggcctagcgacgctgtttattgcccgcttgc 13582393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 44198788 - 44198650
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||   |||  |||  |||  |||||    
T  44198788 gaggctgttgaccttctacatagagttcagaaggttatgcatagcaatgtcatgtctcctaggtccatgaatgttgt---gtttgcgataattgattttg 44198692  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||  |||| | ||| |||||| ||||||||    
T  44198691 ccatccaaaaaggttgagcgacacagcttgttgtccgcttgc 44198650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 431 - 562
Target Start/End: Original strand, 38670974 - 38671102
Alignment:
Q  431 tgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaa 530  Q
    ||||||||||||||||||  |||  || |||||||||||||| ||||||||||||||||||||||||| |||||  ||||||||| ||||||||||| ||    
T  38670974 tgaccttctacatagagtctaaagagttatgcatagcaatgttatgtctcctaggtccatgaatgttg-tgtgt--acgaggattggttttgccatctaa 38671070  T
Q  531 aaaggtctagcggcgcagtttgttgcccgctt 562  Q
    ||| |||||||||||||| |||||| ||||||    
T  38671071 aaaagtctagcggcgcagcttgttgtccgctt 38671102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 432 - 564
Target Start/End: Original strand, 4763888 - 4764016
Alignment:
Q  432 gaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaa 531  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||   ||||||||| ||||||||| |  ||||||||||||    
T  4763888 gaccttctacatagagttcaaaaggttatgcatagcaatgtcatgtctcct-ggtccatgaa---tgttgtgtttacgaggattagaattgccatccaaa 4763983  T
Q  532 aaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||  | | ||||||  |||||||||||||||    
T  4763984 aaggcttggtggcgcaacttgttgcccgcttgc 4764016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 428 - 541
Target Start/End: Complemental strand, 5338659 - 5338552
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||||   |||   ||||||||| ||||||||| |||||||||||    
T  5338659 tgttgacattctacatagagttcaaaaggtcatgcgtagcaatgtcttgtctcataggtc---gaa---tgttgtgtttacgaggattggttttgccatc 5338566  T
Q  528 caaaaaggtctagc 541  Q
    ||||| ||||||||    
T  5338565 caaaatggtctagc 5338552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 420 - 535
Target Start/End: Original strand, 38978882 - 38978994
Alignment:
Q  420 cctgaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgtt 519  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||  || ||   ||||||||| ||||  ||| |||    
T  38978882 cctgaggccgttgaccttctacatatagttcaaaaggtgatgcataacaatgtcatgtctcataggtttatcaa---tgttgtgtttacgaaaattagtt 38978978  T
Q  520 ttgccatccaaaaagg 535  Q
    ||||||||||||||||    
T  38978979 ttgccatccaaaaagg 38978994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 423 - 534
Target Start/End: Original strand, 3443398 - 3443506
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||  || |||||   ||||||||| |||| |||| ||||||    
T  3443398 gaggttgttgaccttctacatagagttcaaagggtcatgcgtaggaatgtcttgtctcctaaatctatgaa---tgttgtgtttacgatgattggttttg 3443494  T
Q  523 ccatccaaaaag 534  Q
    ||||||| ||||    
T  3443495 ccatccacaaag 3443506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 427 - 534
Target Start/End: Complemental strand, 21552685 - 21552577
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagca----atgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||||||||||||||||||||||||||||||| |    || |||| |||||||||||||||||||   ||||||| || || ||| ||||||    
T  21552685 ctgttgaccttctacatagagttcaaaaggtcatgcatagtacgtaatatcatatctcctaggtccatgaatg---ttgtgtttacaagaattggttttg 21552589  T
Q  523 ccatccaaaaag 534  Q
     |||||||||||    
T  21552588 acatccaaaaag 21552577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 423 - 499
Target Start/End: Complemental strand, 38146077 - 38146001
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| |||| || |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  38146077 gaggttgtttacattctacttagagttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgt 38146001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 535
Target Start/End: Original strand, 52411983 - 52412086
Alignment:
Q  429 gttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatcc 528  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  |||| ||   | ||||||| || | ||||  |||||||||||    
T  52411983 gttgaccttctacatagagttcaaagggtcatgcataacaatgtcatgtctcctagacccataaa---tattgtgtttacaatgattgattttgccatcc 52412079  T
Q  529 aaaaagg 535  Q
    |||||||    
T  52412080 aaaaagg 52412086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 535
Target Start/End: Original strand, 25094665 - 25094767
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatcca 529  Q
    ||||||||||||||| |||||||| |||||||||||||||||| || |||  || |||||||||   |||||||||||||| |||| ||||||| ||| |    
T  25094665 ttgaccttctacatatagttcaaatggtcatgcatagcaatgtaatatcttttaagtccatgaa---tgttgtgttcacgaagattagttttgcaatcta 25094761  T
Q  530 aaaagg 535  Q
    ||||||    
T  25094762 aaaagg 25094767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 497
Target Start/End: Complemental strand, 51234637 - 51234563
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 497  Q
    |||| |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| | |||| ||||||    
T  51234637 gaggttgttgaccttctacatagagttcaaaaggttatgcataacaatgttatgtctcctaagcccattaatgtt 51234563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 539
Target Start/End: Complemental strand, 4473073 - 4472970
Alignment:
Q  433 accttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaa 532  Q
    |||||||||||| ||||||||   |||||||||||||| |||||||||||||||| |||||   | ||||||| ||||| ||| |||||| |||||||||    
T  4473073 accttctacataaagttcaaagaatcatgcatagcaatttcatgtctcctaggtctatgaa---tattgtgtttacgagaattggttttgtcatccaaaa 4472977  T
Q  533 aggtcta 539  Q
    | |||||    
T  4472976 aagtcta 4472970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 462 - 564
Target Start/End: Original strand, 4669788 - 4669887
Alignment:
Q  462 catagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgct 561  Q
    |||| |||||||||||||||| ||||||||||||||||   ||| |||| ||||  |||||  |||||||||||| | ||||||||| ||||||||||||    
T  4669788 cataacaatgtcatgtctccttggtccatgaatgttgt---gtttacgatgattgattttgttatccaaaaaggtttggcggcgcagcttgttgcccgct 4669884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 25325045 - 25324974
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||||||||||||||||||||| | |||||||||||||||||| || |||||  ||||||||| ||||    
T  25325045 tgttgaccttctacatagagttcaaatgatcatgcatagcaatgtcaagtttcctaaatccatgaatattgt 25324974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 564
Target Start/End: Complemental strand, 26276577 - 26276498
Alignment:
Q  482 taggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||||   ||| | |||||||  ||||||||||||||||| |||||||| | || |||||||||||||||    
T  26276577 taggtccatgaatgttgt---gtttatgaggattgattttgccatccaaaaagatctagcggtgtagcttgttgcccgcttgc 26276498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 534
Target Start/End: Complemental strand, 49017984 - 49017880
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||| ||||||| || ||||||||||||||||||||  ||||||||||    |||||| |||||   ||||||||| | |||||||  |||||    
T  49017984 gaggttgttgatcttctacgtaaagttcaaaaggtcatgcatataaatgtcatgt----taggtcaatgaa---tgttgtgtttatgaggattgattttg 49017892  T
Q  523 ccatccaaaaag 534  Q
    ||||||||||||    
T  49017891 ccatccaaaaag 49017880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 535
Target Start/End: Original strand, 7257655 - 7257751
Alignment:
Q  436 ttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaagg 535  Q
    ||||||||| |||||||| ||  || ||||||||| |||||| | |||||||||||||   ||||||||| |||| |||| |||||| ||| ||||||||    
T  7257655 ttctacatatagttcaaagggctatccatagcaatatcatgtattctaggtccatgaa---tgttgtgtttacgaagattagttttgtcattcaaaaagg 7257751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 499
Target Start/End: Complemental strand, 42206081 - 42206012
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||| |||||||||||||| ||| |||||||||||| ||||| |||| |||||| ||||| || |||||    
T  42206081 ttgacattctacatagagtttaaatggtcatgcatagaaatgtaatgtatcctagatccataaacgttgt 42206012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 499
Target Start/End: Complemental strand, 37992353 - 37992278
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| ||||||||||||||| ||||||| || ||||||||| || ||||||||| ||| || || ||||||||||||    
T  37992353 gaggttgttgaccttctacaaagagttc-aagggtcatgcacagtaatgtcatgactcgtacgtgcatgaatgttgt 37992278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 499
Target Start/End: Original strand, 46940871 - 46940935
Alignment:
Q  435 cttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||||||||||| | |||||||   |||||||||| ||| ||||| ||||||||||||    
T  46940871 cttctacatagagttcaaaggatcatgcacgacaatgtcatgactcataggttcatgaatgttgt 46940935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 7900879 - 7900812
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccat 490  Q
    |||| ||||||||||||||||||||||  || | | || ||||||||||| |||| ||||||||||||    
T  7900879 gaggttgttgaccttctacatagagtttgaaggattatacatagcaatgttatgtttcctaggtccat 7900812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 4669088 - 4669130
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaat 470  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||    
T  4669088 tgttgaccttctacatagagttcagaagatcatgcataacaat 4669130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 3643149 - 3643096
Alignment:
Q  446 agttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||| | ||||||||| ||||||||||| |  ||||||||||||||||||    
T  3643149 agttcaaaggatcatgcataacaatgtcatgttttttaggtccatgaatgttgt 3643096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 483
Target Start/End: Complemental strand, 4190854 - 4190826
Alignment:
Q  455 ggtcatgcatagcaatgtcatgtctccta 483  Q
    |||||||||||||||||||||||||||||    
T  4190854 ggtcatgcatagcaatgtcatgtctccta 4190826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 483
Target Start/End: Complemental strand, 4191026 - 4190998
Alignment:
Q  455 ggtcatgcatagcaatgtcatgtctccta 483  Q
    |||||||||||||||||||||||||||||    
T  4191026 ggtcatgcatagcaatgtcatgtctccta 4190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 494
Target Start/End: Original strand, 7502098 - 7502167
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaat 494  Q
    |||| ||||||||||||||  |||||| ||| ||||||||| | |||||||||| ||| ||| |||||||||    
T  7502098 gaggttgttgaccttctac--agagtttaaagggtcatgcacaacaatgtcatgactcatagatccatgaat 7502167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 50446202 - 50446150
Alignment:
Q  510 aggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgctt 562  Q
    |||||| |||||| ||||||||||||  |||| |||||| |||||||||||||    
T  50446202 aggattggttttgtcatccaaaaaggattagcagcgcaggttgttgcccgctt 50446150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 54508470 - 54508546
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| |||||||||||| ||||  || |||| | |||||| || |||| |||| ||| |||||||||||||||||||    
T  54508470 gaggttgttgaccttctgcataaggtacaaaggatcatgcgtaacaatatcatatctgctaggtccatgaatgttgt 54508546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 21358711 - 21358326
Alignment:
Q  12 gcaaaccagcaacacataatgaatcatcaccgtaatgttattttatcaaaaacgatcattaaaaggtctaggaaaattcaaaacagaggacttttataac 111  Q
    ||||||||||||||| |||||||||||||||||| | |||||| |||| |||| ||||| ||| ||||||||||||||  ||| ||||||  ||||  |     
T  21358711 gcaaaccagcaacacgtaatgaatcatcaccgtagttttatttcatcagaaaccatcatcaaacggtctaggaaaatttgaaaaagaggatctttaccaa 21358612  T
Q  112 aatgttcagcatgaacatcatacaatgttcaccacttttggcactcaaacattcatgaaaatatcaata-aaaaatagagacagattcctaacacatcat 210  Q
    ||||||||||||||||||        |||||| ||||||||||||||||| |||||||||| ||| ||| ||||||||| ||||||| |||  |||| |     
T  21358611 aatgttcagcatgaacat--------gttcactacttttggcactcaaaccttcatgaaaacatcgatacaaaaatagacacagatttctat-acattag 21358521  T
Q  211 acatcaaatccgtgctttta-ctttgaattagttgcgcaaagaatagtgtataaaattgtagacaaaaacagttctcacagaaattccaaaaaagagcgt 309  Q
    ||||||||||| | |||| | |||||| ||| |||| || || |||||| ||||||||  | ||||||||||||||||||||||||  || || || | |    
T  21358520 acatcaaatccttactttaaactttgatttaattgctcacagtatagtgcataaaatttcaaacaaaaacagttctcacagaaattaaaacaacgaccat 21358421  T
Q  310 gcaactttagtatctcatttgaaggctcaaaactcatctaatcagtatcaaatttcatataccatttcctgaacatgttagtaattatatagact 404  Q
    |||||||||| || ||| |||| ||||||||||||||| ||||| |||| |||| || | |||||   || ||  |||||||||| |||||||||    
T  21358420 gcaactttagcatatcagttgagggctcaaaactcatccaatcactatcgaattccacacaccatcagctcaaattgttagtaatcatatagact 21358326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 21473024 - 21472886
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| ||||| | ||||||    
T  21473024 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaat---gttgcgttcaggaggactggttttg 21472928  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||  || ||||||||||||    
T  21472927 ccatccaaaaaggtctagcggcgcaacttattgcccgcttgc 21472886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 423 - 563
Target Start/End: Original strand, 24177597 - 24177734
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||||    
T  24177597 gaggctgtttaccttctacatagagttcaaaaagtcatgcatagcaatgtcatatctcctaggtccatgaa---tgttgtgttcacgaggattggttttg 24177693  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    ||| ||||||||||||||||| |||| ||||||||||||||    
T  24177694 ccaaccaaaaaggtctagcggtgcagcttgttgcccgcttg 24177734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 22346916 - 22346778
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||||   ||||||||||||||||| ||||||    
T  22346916 gaggttgttgaccttctacacagagttcaaaaggtcatgcatagaaatgtcatgtctcctaggtttatgaatg---ttgtgttcacgaggattagttttg 22346820  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  22346819 ccatccaaaaaggtctagcggcgcagcttgttgtccgcttgc 22346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 447 - 564
Target Start/End: Original strand, 868513 - 868625
Alignment:
Q  447 gttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgc 546  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||     ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  868513 gttcaaaaggtcatgcatagcaatgtcatgtctcctaagtccatgaat-----tgtgttcacaaggattggttttgccatccaaaaaggtctagcggcgc 868607  T
Q  547 agtttgttgcccgcttgc 564  Q
    || |||||||||||||||    
T  868608 agcttgttgcccgcttgc 868625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 423 - 562
Target Start/End: Complemental strand, 34644587 - 34644451
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||   ||||||| |||| ||||  |||||    
T  34644587 gaggttgttgaccttctacatagagtccaaagggttatgcatatcaatgttatgtctcctaggtccatgaatg---ttgtgtttacgatgattgattttg 34644491  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgctt 562  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  34644490 ccatccaaaaaagtctagcggcgcagtttgttgcccgctt 34644451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 423 - 563
Target Start/End: Original strand, 28041213 - 28041350
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||   ||||||| ||| |||||||  ||||     
T  28041213 gaggcggttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtcctctaagtccatgaa---tgttgtgctcatgaggattgattttt 28041309  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    ||||||||||||||||||||||| || |||||| |||||||    
T  28041310 ccatccaaaaaggtctagcggcggagcttgttgtccgcttg 28041350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 423 - 558
Target Start/End: Original strand, 20259883 - 20260015
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||  || ||   ||||||||| |   ||||| ||||||    
T  20259883 gaggttgttgaccttctacatagagttcaaaaggtcatgcatagtaatgtcatgtctcataagttaataaa---tgttgtgtttatatggattggttttg 20259979  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgccc 558  Q
    ||||||||||||||||||||||||||||||||||||    
T  20259980 ccatccaaaaaggtctagcggcgcagtttgttgccc 20260015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 427 - 564
Target Start/End: Complemental strand, 7213267 - 7213126
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgt----gttcacgaggatttgttttg 522  Q
    ||||||| ||||| |||| ||||||||| ||||||||||  |||||||||||| |||||||||||||||||||  |      |||||| |||| |||||     
T  7213267 ctgttgagcttctgcataaagttcaaaatgtcatgcataataatgtcatgtcttctaggtccatgaatgttgtgttcacgaatcacgatgattggtttta 7213168  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  7213167 ccatccaaaaaggtctagcggcgcaacttgttgcccgcttgc 7213126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 423 - 555
Target Start/End: Original strand, 31737409 - 31737537
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||    | ||||| |||||||||  |||||    
T  31737409 gaggctattgacattctacatagagttcaaaaggtcatgcatatcaatgttatgtttcctagatccatgaat----tagtgtttacgaggattgattttg 31737504  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttg 555  Q
    |||||||||||||  | ||||||||| ||||||    
T  31737505 ccatccaaaaaggcttggcggcgcagcttgttg 31737537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 423 - 557
Target Start/End: Original strand, 45659734 - 45659863
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||| || ||   ||| ||||| |||||||   ||||||    
T  45659734 gaggctgttgaccttcta--tagagttcaaaagatcatgcatagcaatgtcatgtctcctaggtcaataaa---tgtcgtgtttacgaggaccggttttg 45659828  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcc 557  Q
     || ||||||||||||||| |||||  ||||||||    
T  45659829 tcacccaaaaaggtctagctgcgcaaattgttgcc 45659863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 423 - 554
Target Start/End: Complemental strand, 2898723 - 2898595
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| || |  ||||||||   ||||||| | |||||||  |||||    
T  2898723 gaggttgttgaccttctacatagagttcaaaagatcatgcataacaatatcatgtctcatacgatcatgaatg---ttgtgtttaagaggattgattttg 2898627  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgtt 554  Q
    |||||||||||||  |||||||| || |||||    
T  2898626 ccatccaaaaaggcttagcggcgtagcttgtt 2898595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 467 - 564
Target Start/End: Complemental strand, 30688534 - 30688440
Alignment:
Q  467 caatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||| ||||| ||||||||||||||||   ||| ||||||||| ||||||  ||||||||||| |||||||||||| |||||||||||||||    
T  30688534 caatgtcatgactcctgggtccatgaatgttgt---gtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgc 30688440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 559
Target Start/End: Complemental strand, 2764500 - 2764367
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||| ||| |||| ||| ||||| | |||||| ||||||| ||||||||| ||   ||||||||| |||| ||||  ||||     
T  2764500 gaggttgttgaccttctacataaagtccaaagggttatgcaaatcaatgttatgtctcttaggtccataaa---tgttgtgtttacgatgattgatttta 2764404  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccg 559  Q
    |||||||||||||| ||||||||||| ||||| ||||    
T  2764403 ccatccaaaaaggtttagcggcgcagcttgttacccg 2764367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 423 - 484
Target Start/End: Original strand, 29169879 - 29169940
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctag 484  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29169879 gaggttgttaaccttctacatagagttcaaaaggtcatgcacagcaatgtcatgtctcctag 29169940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 482 - 564
Target Start/End: Complemental strand, 5454057 - 5453978
Alignment:
Q  482 taggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||||   ||| || |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  5454057 taggtccatgaatgttgt---gtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgc 5453978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 428 - 499
Target Start/End: Original strand, 4862080 - 4862151
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||| ||||||||||||||    
T  4862080 tgttgaccttctacatagagttcaaagggtcatgcataacaatgtcacgtcccttagatccatgaatgttgt 4862151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 497 - 563
Target Start/End: Original strand, 1114025 - 1114091
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  1114025 tgttgtgtttacgaggattggttttgccatccaaaaaggtctaacggcacagcttgttgcccgcttg 1114091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 497 - 555
Target Start/End: Original strand, 28493488 - 28493546
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttg 555  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  28493488 tgttatgttcacgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttg 28493546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 500 - 564
Target Start/End: Complemental strand, 19035426 - 19035362
Alignment:
Q  500 tgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||| ||||    
T  19035426 tgtgttcacgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgc 19035362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 499
Target Start/End: Complemental strand, 38731630 - 38731554
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| |||| ||||||||||||||||||||| ||||||||| |  ||||||||| ||||||||||||||||| ||||    
T  38731630 gaggttgttaaccttctacatagagttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgt 38731554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 465 - 562
Target Start/End: Complemental strand, 21934357 - 21934262
Alignment:
Q  465 agcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgctt 562  Q
    ||||||||  |||||||||| ||||||||||||  ||| || | ||||||| |||||||||||||||||||  ||||||||||| |||||||| ||||    
T  21934357 agcaatgttttgtctcctagttccatgaatgtt--tgtatttaagaggattggttttgccatccaaaaagggttagcggcgcagcttgttgcctgctt 21934262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 423 - 555
Target Start/End: Complemental strand, 47459703 - 47459575
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| |||||||||||||||||||| |||| |   |||||||||||||| |||||||||| ||| || ||   ||||||||| ||||| |||  ||| |    
T  47459703 gaggcagttgaccttctacatagagtccaaaggaatatgcatagcaatgttatgtctcctaagtctataaa---tgttgtgtttacgagaattgatttag 47459607  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttg 555  Q
    |||| |||||||||||||| |||||| ||||||    
T  47459606 ccattcaaaaaggtctagc-gcgcagcttgttg 47459575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 483
Target Start/End: Original strand, 35387747 - 35387802
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctccta 483  Q
    |||||| ||||||||||||||||||| || |||||||| |||||||||||||||||    
T  35387747 tgttgatcttctacatagagttcaaagggacatgcatatcaatgtcatgtctccta 35387802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 472 - 564
Target Start/End: Complemental strand, 4611161 - 4611072
Alignment:
Q  472 tcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||||||||| ||||   |||||||| ||||  ||||| |||||||||||||||| | || ||| |||||| ||||||||    
T  4611161 tcatgtctcctaggtccatgaatattgt---gttcacgatgattgattttgtcatccaaaaaggtctaacagcacagcttgttgtccgcttgc 4611072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 559
Target Start/End: Original strand, 45835301 - 45835404
Alignment:
Q  452 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagttt 551  Q
    |||||||||| ||  || |||||| ||| ||||||| |||||||||||   ||| |||||||||  |||||||||||||||| ||||||| |||||||||    
T  45835301 aaaggtcatgtattacattgtcatctcttctaggtctatgaatgttgt---gtttacgaggattgattttgccatccaaaaa-gtctagctgcgcagttt 45835396  T
Q  552 gttgcccg 559  Q
     |||||||    
T  45835397 attgcccg 45835404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 18616239 - 18616315
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||||||| ||||||||| | |||||| |||||||||||||||| | |||| || ||||||||| ||| ||||    
T  18616239 gaggctgttgacattctacatataattcaaagggtcatgcatagcaatattatgtatcttaggtccataaatattgt 18616315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 559
Target Start/End: Original strand, 17077973 - 17078035
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccg 559  Q
    ||||||||||| || |||| ||||||||||| ||||| ||||| |||||||| ||||||||||    
T  17077973 tgttgtgttcatgatgattggttttgccatctaaaaaagtctaacggcgcagattgttgcccg 17078035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 44420639 - 44420595
Alignment:
Q  520 ttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||    
T  44420639 ttgccatccaaaaaggcttagcggcgcagtttgttgctcgcttgc 44420595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 562
Target Start/End: Original strand, 48841169 - 48841304
Alignment:
Q  424 aggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgc 523  Q
    |||| ||||||||||||||||||||  |||  || |||||||  ||||| ||||||||||  || |||||   | || |||| |||||||||  ||||||    
T  48841169 aggcagttgaccttctacatagagtctaaagagttatgcataataatgttatgtctcctaaatctatgaa---tattatgtttacgaggattgattttgc 48841265  T
Q  524 catccaaaaaggtctagcggcgcagtttgttgcccgctt 562  Q
     ||||||||| ||||||| |||||  |||||| ||||||    
T  48841266 aatccaaaaaagtctagcagcgcaacttgttgtccgctt 48841304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 11128361 - 11128404
Alignment:
Q  444 agagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtc 487  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||    
T  11128361 agagtttaaaaggtcatgcatatcaatgttatgtctcctaggtc 11128404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 6670208 - 6670265
Alignment:
Q  440 acatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 497  Q
    ||||||||||||||  |||||||||  ||||||||| |||||||| | ||||||||||    
T  6670208 acatagagttcaaagagtcatgcattacaatgtcatatctcctagattcatgaatgtt 6670265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 554
Target Start/End: Original strand, 29170322 - 29170398
Alignment:
Q  475 tgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgtt 554  Q
    ||||||||||||||||||||||||    ||| || |  ||||||||||||||  ||||||||||| ||| ||||||||||    
T  29170322 tgtctcctaggtccatgaatgttgc---gtttacaacaatttgttttgccatttaaaaaggtctaacggtgcagtttgtt 29170398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 42919876 - 42919832
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgt 472  Q
    |||| ||||||||||||||||| ||| ||||||||| ||||||||    
T  42919876 tgttaaccttctacatagagtttaaagggtcatgcagagcaatgt 42919832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 22589423 - 22589560
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||   ||||||||||||||| ||||||    
T  22589423 gaggctgttgacttt-tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcataggtctatgaatgtt---gtgttcacgaggattggttttg 22589518  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  22589519 ccatccaaaaaggtctagcggcgcagcttgttgcccgcttgc 22589560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 38815315 - 38815177
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||| |||||     
T  38815315 gagggtgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatg---ttgtgtttacgaggattggttttt 38815219  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||  ||||||||||| |||||||||||||||    
T  38815218 ccatccaaaaaggcttagcggcgcagcttgttgcccgcttgc 38815177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 37514242 - 37514104
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||   |||| ||||||||||||  | |||    
T  37514242 gaggctgttgaccttctacatagagttcaaaaggtcatgcatatcaatgttacgtctcttaggtccatgaatg---ttgtattcacgaggattgatcttg 37514146  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||| ||||||||||||| |||||||| |||||||||||||||    
T  37514145 ccacccaaaaaggtctaacggcgcagcttgttgcccgcttgc 37514104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 18804633 - 18804496
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| || ||    |||| |||| ||||||||| ||||||    
T  18804633 gaggctgttgaccttctacatagatttcaaaaggtcatgcataacaatgtcatgactcctaggttca-ga---gtgttttgtttacgaggattggttttg 18804538  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  18804537 ccatccaaaaaggtctagcggcgcagcttgttgcctgcttgc 18804496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 430 - 556
Target Start/End: Complemental strand, 39434681 - 39434558
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatcca 529  Q
    |||| |||||||||||||| |||| ||| ||||||| |||||| ||||||| ||| ||||||||||||||   ||| |||||||||  ||||||||||||    
T  39434681 ttgatcttctacatagagtccaaagggttatgcatatcaatgtaatgtctcttagatccatgaatgttgt---gtttacgaggattgattttgccatcca 39434585  T
Q  530 aaaaggtctagcggcgcagtttgttgc 556  Q
    ||||||||||||||||||| |||||||    
T  39434584 aaaaggtctagcggcgcagcttgttgc 39434558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 3187990 - 3187869
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||| |||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||   ||||||| ||||| ||| ||||||    
T  3187990 gaggttgttaaccttctacatagagt-caaagggttatgcatagcaatgttatgtctcctaggtccatgaatg---ttgtgtttacgagaattggttttg 3187895  T
Q  523 ccatccaaaaaggtctagcggcgcag 548  Q
    ||||||||||||||||| ||| ||||    
T  3187894 ccatccaaaaaggtctaacggtgcag 3187869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 528
Target Start/End: Complemental strand, 24125049 - 24124947
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||| || |||||| ||||||    
T  24125049 gaggttgttggccttctacataaagttcaaaaggtcatgcatagcaatgtcatgtctcataggtccatgaatg---ttgtgtttacaaggattagttttg 24124953  T
Q  523 ccatcc 528  Q
    ||||||    
T  24124952 ccatcc 24124947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 423 - 558
Target Start/End: Complemental strand, 4699891 - 4699760
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||||||||| ||| |||||||| ||||||| |||||||| | ||||| ||||||||||||||||||||   ||| || |||||| ||||||    
T  4699891 gaggctgttgaccttctatataaagttcaaa-ggtcatgaatagcaatattatgtcacctaggtccatgaatgttgt---gtttacaaggattagttttg 4699796  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgccc 558  Q
    |||||||||||||  ||| ||||||| |||||||||    
T  4699795 ccatccaaaaaggcttagtggcgcagcttgttgccc 4699760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 423 - 544
Target Start/End: Complemental strand, 6592596 - 6592479
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||| ||||||   ||||||||| ||||| ||| ||||||    
T  6592596 gaggttgttgaccttctgcatagagttcaaaaggtcatgcata-taatgtcatgtctcataggttcatgaa---tgttgtgtttacgagtattggttttg 6592501  T
Q  523 ccatccaaaaaggtctagcggc 544  Q
     |||||| ||||||||||||||    
T  6592500 tcatccagaaaggtctagcggc 6592479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 497
Target Start/End: Complemental strand, 3821245 - 3821171
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 497  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||    
T  3821245 gaggttgttgaccttctacatagagttcaaagggtaatgcatagcaatgtcatgtctcctaggttcataaatgtt 3821171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 430 - 515
Target Start/End: Complemental strand, 3863331 - 3863246
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatt 515  Q
    |||||||||||||||||||||||| |||  |||||||||||||||| | ||||| ||| |||||| |||||||||| |||||||||    
T  3863331 ttgaccttctacatagagttcaaagggtagtgcatagcaatgtcatctttcctaagtctatgaatattgttgtgtttacgaggatt 3863246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 428 - 554
Target Start/End: Complemental strand, 6618300 - 6618178
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||||||| | ||||| |||||||||||||||||||  ||||||||||||| ||||||||||||   |||| |||| ||||| ||| |||||| ||||    
T  6618300 tgttgaccttttgcatagcgttcaaaaggtcatgcatat-aatgtcatgtctcataggtccatgaa---tgttatgtttacgagtattggttttgtcatc 6618205  T
Q  528 caaaaaggtctagcggcgcagtttgtt 554  Q
    ||||||| |||| |||| ||| |||||    
T  6618204 caaaaagatctaacggcacagcttgtt 6618178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 423 - 499
Target Start/End: Complemental strand, 43824010 - 43823934
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||    
T  43824010 gaggctattgacctttcacatagagttcaaatggtcatgcatagcaatgtcatgtctccgagatccattaatgttgt 43823934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 532
Target Start/End: Complemental strand, 24451105 - 24451036
Alignment:
Q  459 atgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaa 532  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||| || ||||||||||||||||||    
T  24451105 atgcatagcaatgtcatgtctcctaggtccatgaatg---ttgtgttcacgatga-ttgttttgccatccaaaa 24451036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 35740077 - 35740135
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggt 486  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  35740077 tgttgaccttctacatagagttcaaaaagtcatgcataacaatgtcatgtcccctaggt 35740135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 9259378 - 9259454
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| |||||||||||||||||||||||| |   ||||||||||||||||||| | ||||| |||||||||||||||    
T  9259378 gaggttgttgaccttctacatagagttcacagactcatgcatagcaatgtcatatatcctaagtccatgaatgttgt 9259454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 500 - 564
Target Start/End: Original strand, 18596759 - 18596823
Alignment:
Q  500 tgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| | ||||||    
T  18596759 tgtgttcacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgc 18596823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 40223489 - 40223541
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcat 475  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  40223489 gaggttgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcat 40223541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 556
Target Start/End: Complemental strand, 8882320 - 8882235
Alignment:
Q  468 aatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgc 556  Q
    ||||||||||||||||||||||||||||   ||||||| |||||||||  |||||||||| ||||| || || |||||||| |||||||    
T  8882320 aatgtcatgtctcctaggtccatgaatg---ttgtgtttacgaggattaattttgccatcaaaaaatgtttaacggcgcagcttgttgc 8882235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 473
Target Start/End: Complemental strand, 500244 - 500199
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtc 473  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||    
T  500244 tgttggccttctacatagagttcaaaaggtcatgcatatcaatgtc 500199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 534
Target Start/End: Complemental strand, 4066829 - 4066758
Alignment:
Q  460 tgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaag 534  Q
    ||||||||||||| |||| ||||||||||||||    |||||||||||||| |||| ||||| ||||||||||||    
T  4066829 tgcatagcaatgtaatgtgtcctaggtccatga---ctgttgtgttcacgatgattggttttaccatccaaaaag 4066758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 25021900 - 25021976
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| |||||||| || ||| | |||||||| ||||||||| | ||||||||| ||||||||||||| |||||||||    
T  25021900 gaggttgttgaccatccacacaaagttcaaagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgt 25021976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 539
Target Start/End: Complemental strand, 42659230 - 42659135
Alignment:
Q  441 catagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtcta 539  Q
    ||||||||  ||| ||| |||||||||||| | |||||| |||||| ||||||||||||   ||| |||||||||  ||||| ||||||||||||||||    
T  42659230 catagagtctaaagggttatgcatagcaatattatgtcttctaggttcatgaatgttgt---gtttacgaggattaattttgtcatccaaaaaggtcta 42659135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 517 - 564
Target Start/End: Complemental strand, 15566209 - 15566162
Alignment:
Q  517 gttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  15566209 gttttgccatccaaaaaagtctagcggcatagtttgttgcccgcttgc 15566162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 28196208 - 28196137
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||| ||||| ||||||||||| | ||||||| | |||||||||||||||||| |||| | |||||||    
T  28196208 tgttgaccatctacgtagagttcaaaggatcatgcacaacaatgtcatgtctcctagatccacggatgttgt 28196137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 8115833 - 8115779
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgt 477  Q
    |||| ||||||||||||||||| |||||||| | |||||||| ||||||||||||    
T  8115833 gaggttgttgaccttctacataaagttcaaaggatcatgcattgcaatgtcatgt 8115779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 497
Target Start/End: Original strand, 39671258 - 39671332
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 497  Q
    |||| |||| ||||| ||| ||||||| ||| ||||||| |||  ||||||||||||||||| ||||||||||||    
T  39671258 gaggttgttaaccttttacgtagagttaaaagggtcatgaataaaaatgtcatgtctcctagatccatgaatgtt 39671332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 428 - 535
Target Start/End: Original strand, 5329693 - 5329797
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||||||||| ||| ||||||||| ||||||| | | |||| |||||||||||| ||| || ||   ||||||||| | |||||||  ||||| ||||    
T  5329693 tgttgaccttctgcattgagttcaaagggtcatggacaacaatatcatgtctcctatgtctatcaa---tgttgtgtttatgaggattaattttgacatc 5329789  T
Q  528 caaaaagg 535  Q
    ||||||||    
T  5329790 caaaaagg 5329797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 499
Target Start/End: Complemental strand, 4073555 - 4073479
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| ||||||||||||||| |||  ||||   |||||||||||||||||||||| ||| || ||| ||||||||||    
T  4073555 gaggttgttgaccttctacagagaaatcaatgagtcatgcatagcaatgtcatgtttccaagatccgtgaatgttgt 4073479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 499
Target Start/End: Original strand, 121812 - 121883
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||| ||||||| | |||| ||||| ||||||||| ||||||||||||  ||| ||||||| |||||||    
T  121812 tgttgacattctacacaaagtttaaaagatcatgcatatcaatgtcatgtcatctaagtccatggatgttgt 121883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 3825651 - 3825580
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||||||| ||| ||||||  || ||||||||||| ||||||| || ||| ||||||||| ||||    
T  3825651 tgttgaccttctacacagaattcaaagagtaatgcatagcaacgtcatgtttcatagatccatgaatattgt 3825580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 487
Target Start/End: Original strand, 12598162 - 12598213
Alignment:
Q  436 ttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtc 487  Q
    ||||||| |||||||||| ||||||||||||||| ||  |||||||||||||    
T  12598162 ttctacaaagagttcaaagggtcatgcatagcaacgttgtgtctcctaggtc 12598213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 557
Target Start/End: Complemental strand, 24320287 - 24320227
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcc 557  Q
    ||||||||| |||||||||  |||||  ||||||||||||||||| | |||| ||||||||    
T  24320287 tgttgtgtttacgaggattgattttgatatccaaaaaggtctagcagtgcagcttgttgcc 24320227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 24350880 - 24350944
Alignment:
Q  498 gttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgctt 562  Q
    |||||||| ||||||||| |||||||| |||||||| | |||| ||| |||  ||||||||||||    
T  24350880 gttgtgtttacgaggattggttttgccctccaaaaaagcctagtggcccagcctgttgcccgctt 24350944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 103127 - 102989
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||   ||||||| ||||||||| ||||||    
T  103127 gaggctgttgaccttctacatcgagctcaaaaggtcatgcataacaatgtcgtgtctcctaggtccatgaatg---ttgtgtttacgaggattggttttg 103031  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  103030 ccatccaaaaaggtctagcggcgcaacttgttgcccgcttgc 102989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 8e-47; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 21326924 - 21327062
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||  |||||    
T  21326924 gaggctgttgaccttttacatagagttcaaaaggtcatgcatagcaatgttatgtctcctaggtccatgaa---tgttgtgttcacgaggattgattttg 21327020  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||| |||||||| |||||| | ||||||    
T  21327021 ccatccaaaaaggtctaacggcgcagcttgttgtctgcttgc 21327062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 423 - 560
Target Start/End: Complemental strand, 19277314 - 19277178
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||  ||| ||||||    
T  19277314 gaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttg-tgttcacacgaaaattggttttg 19277216  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgc 560  Q
    |||||||||||||||||||||||||| || ||||||||    
T  19277215 ccatccaaaaaggtctagcggcgcagcttattgcccgc 19277178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 423 - 554
Target Start/End: Complemental strand, 24527610 - 24527482
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||   |||| |||||||||||| ||||||    
T  24527610 gaggcggttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatttctccttggtccatgaatg---ttgtattcacgaggattggttttg 24527514  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgtt 554  Q
     ||||||||||| ||||||||||||| |||||    
T  24527513 tcatccaaaaagatctagcggcgcagcttgtt 24527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 45613928 - 45614066
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||  |||||||||||||||||||||| ||||||||| ||||||||  |||||||||||||||||   ||||||||| ||||||||| ||||||    
T  45613928 gaggctgttagccttctacatagagttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaa---tgttgtgtttacgaggattggttttg 45614024  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||| ||||||||||||||||||| |||||| ||||||||    
T  45614025 ccatccgaaaaggtctagcggcgcagcttgttgtccgcttgc 45614066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 423 - 557
Target Start/End: Complemental strand, 982970 - 982839
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||   ||||||||||||||||| || |||    
T  982970 gaggttgttggccttctacatagagttcaaaaggtcatgcatatcaatgtcatgtcttctatgtccatgaatg---ttgtgttcacgaggattggtattg 982874  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcc 557  Q
    |||||||||||||||||||| | ||| ||||||||    
T  982873 ccatccaaaaaggtctagcgacacagcttgttgcc 982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 25187017 - 25187155
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||| | | ||||  ||||     
T  25187017 gaggttgttgaccttctatatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgt---gttcccaatgattgatttta 25187113  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||| |||||| ||||||||||||| |||||||||||||||    
T  25187114 ccatctaaaaagatctagcggcgcagcttgttgcccgcttgc 25187155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 423 - 534
Target Start/End: Complemental strand, 48539202 - 48539094
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||| ||||||    
T  48539202 gaggctgttgatcgtctacatagagtccaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatg---ttgtgtttacgaggattggttttg 48539106  T
Q  523 ccatccaaaaag 534  Q
    ||||||||||||    
T  48539105 ccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 4501280 - 4501142
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||   ||||||| ||||||||| | ||||    
T  4501280 gaggttgttgaccttctacatagagttcaaaagttcatgcatagcaatgtcatgtctcctagattcatgaatg---ttgtgtttacgaggattagctttg 4501184  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
     |||| ||||||||||||| |||||  || ||| ||||||||    
T  4501183 tcatctaaaaaggtctagcagcgcatcttattgtccgcttgc 4501142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 429 - 559
Target Start/End: Original strand, 28517379 - 28517506
Alignment:
Q  429 gttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatcc 528  Q
    |||||||||||||||||||| |||| ||| ||||||| |||||| |||||||||| |||||||||   ||||||||| ||||||||| ||||||||||||    
T  28517379 gttgaccttctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaa---tgttgtgtttacgaggattggttttgccatcc 28517475  T
Q  529 aaaaaggtctagcggcgcagtttgttgcccg 559  Q
    ||||| |||||||| | ||| ||||||||||    
T  28517476 aaaaaagtctagcgacacagcttgttgcccg 28517506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 428 - 548
Target Start/End: Original strand, 41117861 - 41117978
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||   |||||||||||||| ||||  |||||| |||    
T  41117861 tgttaaccttctacatagagtttaaaagatcatgcatagcaatgtcatgtttcctaggtccatgaa---tgttgtgttcacgatgattgattttgctatc 41117957  T
Q  528 caaaaaggtctagcggcgcag 548  Q
    |||||| ||| ||||||||||    
T  41117958 caaaaaagtccagcggcgcag 41117978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 423 - 533
Target Start/End: Complemental strand, 27521492 - 27521385
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||   ||||||| |||||||||  |||||    
T  27521492 gaggttgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatg---ttgtgtttacgaggattgattttg 27521396  T
Q  523 ccatccaaaaa 533  Q
    ||||| |||||    
T  27521395 ccatcgaaaaa 27521385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 5825294 - 5825156
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||  ||| ||| |||||||||||||| |||||||||||||| |||   | ||||||||| ||||||||| ||||||    
T  5825294 gaggttgttgaccttctacatagagtcgaaagggttatgcatagcaatgttatgtctcctaggtctatg---gatgttgtgtttacgaggattggttttg 5825198  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||| ||||||||||  |||||||| ||||| || ||||||    
T  5825197 ccatcgaaaaaggtcttacggcgcagcttgttacctgcttgc 5825156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 423 - 534
Target Start/End: Original strand, 5972302 - 5972410
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || || |||||   ||||||||| ||||||||| ||||||    
T  5972302 gaggttgttgaccttctacatagagttcaaaatgtcatgcatagtaatgtcatttctcccagatctatgaa---tgttgtgtttacgaggattagttttg 5972398  T
Q  523 ccatccaaaaag 534  Q
    ||||||||||||    
T  5972399 ccatccaaaaag 5972410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 40726566 - 40726704
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||| |||| ||| ||||||| |||||  ||||||||||| ||||||||   ||||||||| | |||||||  |||||    
T  40726566 gaggttgttgaccttctacatagagtccaaagggttatgcataacaatgctatgtctcctagatccatgaa---tgttgtgtttatgaggattgattttg 40726662  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||| ||||| |  ||||| |||||||||||||||    
T  40726663 ccatccaaaaatgtctaacatcgcagcttgttgcccgcttgc 40726704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 563
Target Start/End: Complemental strand, 22198007 - 22197871
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||   ||| ||||  |||  |||||    
T  22198007 gaggttgttgaccttctacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgt---gtttacgataattgattttg 22197912  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
     ||||||||||||  | |||| |||  ||||||||||||||    
T  22197911 tcatccaaaaaggcttggcggtgcaacttgttgcccgcttg 22197871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 563
Target Start/End: Original strand, 22239814 - 22239950
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||   ||| ||||  |||  |||||    
T  22239814 gaggttgttgaccttctacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgt---gtttacgataattgattttg 22239909  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
     ||||||||||||  | |||| |||  ||||||||||||||    
T  22239910 tcatccaaaaaggcttggcggtgcaacttgttgcccgcttg 22239950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 497
Target Start/End: Complemental strand, 43856895 - 43856821
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 497  Q
    |||| |||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||    
T  43856895 gaggttgttgaccttctacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgtt 43856821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 465 - 564
Target Start/End: Original strand, 27027758 - 27027854
Alignment:
Q  465 agcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||| |||||||||| |||||||| | || ||||| ||| |||||    
T  27027758 agcaatgtcatgtctcctaggtccatgaatgtt---gtgttcacgaggattggttttgctatccaaaaagatctagcggtgtagcttgttacccacttgc 27027854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 10905134 - 10905066
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgt 496  Q
    ||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||||    
T  10905134 tgttgaccttctacatagagttcaaagagccatgcataacaatgtcatgtctcctaggtccatgaatgt 10905066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 459 - 564
Target Start/End: Original strand, 45003019 - 45003121
Alignment:
Q  459 atgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgccc 558  Q
    |||||||||||||| ||||||| |||| |||||||||||||   ||| |||| ||||  ||||||||||||||||||||||||||||||| || ||| ||    
T  45003019 atgcatagcaatgttatgtctcataggaccatgaatgttgt---gtttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtcc 45003115  T
Q  559 gcttgc 564  Q
    ||||||    
T  45003116 gcttgc 45003121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 423 - 554
Target Start/End: Complemental strand, 34772803 - 34772675
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||| | ||||||| |||||||||| ||||||||||| | |||||||||||||   | ||||||| ||||  ||| ||||||    
T  34772803 gaggttgttgaccttctacataaacttcaaaaagtcatgcatatcaatgtcatgttttctaggtccatgaa---tattgtgtttacgataattggttttg 34772707  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgtt 554  Q
    |||| |||||| || || ||||||| ||||||    
T  34772706 ccattcaaaaaagtttaacggcgcaatttgtt 34772675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 428 - 514
Target Start/End: Original strand, 30216149 - 30216232
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggat 514  Q
    |||||| |||| ||||| |||||||| ||||||||||||||||||||| ||||||||||| |||||   ||||||||||||||||||    
T  30216149 tgttgatcttccacataaagttcaaatggtcatgcatagcaatgtcatatctcctaggtctatgaa---tgttgtgttcacgaggat 30216232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 428 - 534
Target Start/End: Original strand, 42295275 - 42295378
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||||||||||||||| ||||||||  ||||||||| || ||||||||||||||||||||||||   | ||||||| |||| |||| ||||||  |||    
T  42295275 tgttgaccttctacatagcgttcaaaatatcatgcataacattgtcatgtctcctaggtccatgaa---tcttgtgtttacgatgattagttttgttatc 42295371  T
Q  528 caaaaag 534  Q
    |||||||    
T  42295372 caaaaag 42295378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 423 - 565
Target Start/End: Complemental strand, 32584622 - 32584482
Alignment:
Q  423 gaggctgttgaccttctacatagagttc-aaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgtttt 521  Q
    |||| ||||||||||||| ||||||||| ||||| ||||||||| |||||| ||||||| ||| || |||||||||||   ||| || | ||||  ||||    
T  32584622 gaggttgttgaccttctagatagagttccaaaagatcatgcatatcaatgttatgtctcatagatcgatgaatgttgt---gtttacaaagattgatttt 32584526  T
Q  522 gccatccaaaaaggtctagcggcgcagtttgttgcccgcttgct 565  Q
     ||||||||||||| ||||| |||||  |||| |||||||||||    
T  32584525 accatccaaaaaggcctagcagcgcaacttgtcgcccgcttgct 32584482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 44526001 - 44525930
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||||||||||| |||||||||||   ||||||| |||||||||||||||||  ||||||||||||||    
T  44526001 tgttgaccttctacatggagttcaaaagaatatgcataacaatgtcatgtctcctatatccatgaatgttgt 44525930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 423 - 535
Target Start/End: Complemental strand, 23037566 - 23037457
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||| ||||| ||| ||||||| ||| ||||||||||||||||| |||| |||||| |||||   | ||||||| |||||||||  |||||    
T  23037566 gaggttgttgaccatctacgtagggttcaaagggttatgcatagcaatgtcatttctcttaggtctatgaa---ttttgtgtttacgaggattgattttg 23037470  T
Q  523 ccatccaaaaagg 535  Q
    ||||| |||||||    
T  23037469 ccatctaaaaagg 23037457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 469 - 563
Target Start/End: Original strand, 45974731 - 45974822
Alignment:
Q  469 atgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    |||||||||||||||||| ||||||||||||   ||| || |||||   ||||| ||||||||||||||||| ||||||| |||||| |||||||    
T  45974731 atgtcatgtctcctaggttcatgaatgttgt---gtttacaaggataaattttgtcatccaaaaaggtctagtggcgcagcttgttgtccgcttg 45974822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 564
Target Start/End: Complemental strand, 38766254 - 38766207
Alignment:
Q  517 gttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  38766254 gttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgc 38766207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 564
Target Start/End: Complemental strand, 38832225 - 38832185
Alignment:
Q  524 catccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  38832225 catccaaaaaggtctagcggcgcagcttgttgcccgcttgc 38832185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 43333941 - 43334048
Alignment:
Q  448 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgca 547  Q
    |||||||||||||||||| ||||| |||||||||||| || |||||   ||||| ||| | || |||| |||||||||| |||||||   | ||||||||    
T  43333941 ttcaaaaggtcatgcatatcaatgacatgtctcctagatctatgaa---tgttgagtttatgatgattggttttgccattcaaaaagacttggcggcgca 43334037  T
Q  548 gtttgttgccc 558  Q
    | |||||||||    
T  43334038 gcttgttgccc 43334048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 555
Target Start/End: Original strand, 9281222 - 9281351
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcat-----gcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||||||||||||||||| ||||||     ||| | |||||||||| ||| || |||||| ||   ||||||||| | ||| ||| ||||||    
T  9281222 tgttgaccttctacatagagttcaaagggtcatgtacagcacaacaatgtcatgactcttaagtccattaa---tgttgtgtttaggagaattggttttg 9281318  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttg 555  Q
    | |||||||||||  || ||| |||||||||||    
T  9281319 caatccaaaaaggcttaacggtgcagtttgttg 9281351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 555
Target Start/End: Original strand, 9292193 - 9292322
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcat-----gcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||||||||||||||||| ||||||     ||| | |||||||||| ||| || |||||| ||   ||||||||| | ||| ||| ||||||    
T  9292193 tgttgaccttctacatagagttcaaagggtcatgtacagcacaacaatgtcatgactcttaagtccattaa---tgttgtgtttaggagaattggttttg 9292289  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttg 555  Q
    | |||||||||||  || ||| |||||||||||    
T  9292290 caatccaaaaaggcttaacggtgcagtttgttg 9292322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 40432235 - 40432273
Alignment:
Q  112 aatgttcagcatgaacatcatacaatgttcaccactttt 150  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  40432235 aatgttcagcatgaacatcatacaaggttcaccactttt 40432273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 499
Target Start/End: Complemental strand, 5715032 - 5714985
Alignment:
Q  452 aaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  5715032 aaaggtcatacataacaatgttatgtctcctaggtccataaatgttgt 5714985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 487
Target Start/End: Complemental strand, 23793028 - 23792969
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtc 487  Q
    ||||||||||||| ||| |||||||| | |||| ||||| ||||| ||||||||||||||    
T  23793028 tgttgaccttctaaatacagttcaaaggatcatacatagtaatgtaatgtctcctaggtc 23792969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Complemental strand, 38766294 - 38766259
Alignment:
Q  459 atgcatagcaatgtcatgtctcctaggtccatgaat 494  Q
    |||||||||||||| |||||||||||||||||||||    
T  38766294 atgcatagcaatgttatgtctcctaggtccatgaat 38766259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 499
Target Start/End: Original strand, 36558960 - 36559029
Alignment:
Q  429 gttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||| |||| ||||||||| ||| |||||||||||  ||| ||||||||  ||||||||||||||||||    
T  36558960 gttgactttctccatagagtt-aaatggtcatgcatataaatatcatgtcttataggtccatgaatgttgt 36559029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 564
Target Start/End: Complemental strand, 29054816 - 29054732
Alignment:
Q  477 tctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||| |||||||| |||   || | ||||||| ||||||||||||| |||||  ||||||||||| || |||| |||||||    
T  29054816 tctcctaggtctatgaatgtagtt---tttaagaggattggttttgccatccataaaggattagcggcgcagcttattgctcgcttgc 29054732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 6635049 - 6635125
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| |||||||||||||| || | || |||   || |||||| |||||||||||||||||| ||||| ||||||||    
T  6635049 gaggttgttgaccttctacgtaaaattaaaataatcttgcataacaatgtcatgtctcctagatccataaatgttgt 6635125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 539
Target Start/End: Complemental strand, 38839313 - 38839234
Alignment:
Q  457 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtcta 539  Q
    ||||||||| ||||||||||| |   |||||||||||||||||   ||| |||| |||| ||||| ||||||||||| |||||    
T  38839313 tcatgcataacaatgtcatgtttatcaggtccatgaatgttgt---gtttacgaagattggttttaccatccaaaaatgtcta 38839234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 8e-47; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 9685501 - 9685639
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||| | ||||  |||||    
T  9685501 gaggctgtggaccttctatatagagttcaaaaggtcatggatagcaatgtcatgtctcctaggtccatgaa---tgttgtgttcacaaagattgtttttg 9685597  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9685598 ccatccaaaaaggtctagcggcgcagcttgttgcccgcttgc 9685639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 428 - 564
Target Start/End: Original strand, 4413157 - 4413290
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||| |||||||  ||||||||||    
T  4413157 tgttgaccttctacatagggttcaaaaggtcatgcatagcaaagtcatgtctcctaggtccatgaa---tgttgtgttcatgaggattgattttgccatc 4413253  T
Q  528 caaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  4413254 caaaaaggtctagcggcgcagcttgttgcccacttgc 4413290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 423 - 565
Target Start/End: Original strand, 41867994 - 41868132
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||   ||||||||| ||||||||| ||||||    
T  41867994 gaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaa---tgttgtgtttacgaggattggttttg 41868090  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgct 565  Q
    ||| |||||||| ||||||||||||  ||||||||||||||||    
T  41868091 cca-ccaaaaagatctagcggcgcaacttgttgcccgcttgct 41868132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 424 - 564
Target Start/End: Complemental strand, 17344658 - 17344521
Alignment:
Q  424 aggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgc 523  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||| |||||||||  |||| |    
T  17344658 aggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatg---ttgtgtttacgaggattgatttttc 17344562  T
Q  524 catccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
     ||||||||||||||| |||||||| |||||||| ||||||    
T  17344561 gatccaaaaaggtctatcggcgcagcttgttgccggcttgc 17344521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 423 - 563
Target Start/End: Complemental strand, 13413372 - 13413235
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||| | ||| ||| ||||||    
T  13413372 gaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatg---ttgtgtttatgagaattggttttg 13413276  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    ||||||||||||| ||| |||| ||| |||||| |||||||    
T  13413275 ccatccaaaaaggcctaacggctcagcttgttgtccgcttg 13413235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 424 - 563
Target Start/End: Original strand, 18745041 - 18745177
Alignment:
Q  424 aggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgc 523  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||   ||| |  |||||| |||||||    
T  18745041 aggctgttggccttctacatagagttcaaaagatcatgcatagcaatgtcatatttcctaggtctatgaatgttgt---gtttataaggattggttttgc 18745137  T
Q  524 catccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    ||||||||||||||||||||||||| || |||| ||||||    
T  18745138 catccaaaaaggtctagcggcgcagcttattgctcgcttg 18745177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 423 - 563
Target Start/End: Complemental strand, 28225021 - 28224884
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||| |||| | | ||||||  |||| | |||||||||||||| |||||||||||   ||| | || |||||||||||    
T  28225021 gaggttgttgaccttctacatagagtccaaaggattatgcatgacaatattatgtctcctaggtcaatgaatgttgt---gtttatgaagatttgttttg 28224925  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  28224924 ccatccaaaaaggtctagcggcgcagcttattgcccgcttg 28224884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 497 - 557
Target Start/End: Original strand, 15515304 - 15515364
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcc 557  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  15515304 tgttgtgttcacgaggattggttttgccatccaaaaaagtctagcggcgcagtttgttgcc 15515364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 423 - 565
Target Start/End: Original strand, 19161869 - 19162008
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||| | ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||   |  ||||||  ||||||||  |||||    
T  19161869 gaggctgcttaccttttacatagagttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcaatgaa---tagtgtgttttcgaggattgattttg 19161965  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgct 565  Q
     |||||||||||   ||| ||||||| ||| || |||||||||    
T  19161966 tcatccaaaaagacgtagtggcgcagcttgctgtccgcttgct 19162008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 427 - 540
Target Start/End: Complemental strand, 27502379 - 27502269
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccat 526  Q
    |||||||||||||||||||| | |||| ||| |||||||||||| ||||||||||||| || |||||||   ||||||| |||| ||||  |||||| ||    
T  27502379 ctgttgaccttctacatagaatccaaagggttatgcatagcaatatcatgtctcctagatctatgaatg---ttgtgtttacgaagattgattttgcaat 27502283  T
Q  527 ccaaaaaggtctag 540  Q
    ||||||||||||||    
T  27502282 ccaaaaaggtctag 27502269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 494
Target Start/End: Original strand, 16351930 - 16352001
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaat 494  Q
    |||| |||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||    
T  16351930 gaggttgttgaccttctacatagagttcaaatggtcatgcacaacaatgtcatgtctcttaggtacatgaat 16352001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 428 - 487
Target Start/End: Original strand, 20142816 - 20142875
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtc 487  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  20142816 tgttgaccttatacatagagttcaaaaggtcatacataacaatgtcatgtctcctaggtc 20142875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 44686432 - 44686361
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||||||||||| | |||| ||| |||||||||||||| ||||||||||||||| ||||||||||    
T  44686432 tgttgaccttctacatagattccaaagggttatgcatagcaatgttatgtctcctaggtccgtgaatgttgt 44686361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 502 - 564
Target Start/End: Original strand, 3208406 - 3208468
Alignment:
Q  502 tgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  3208406 tgtttacgaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgc 3208468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 463 - 564
Target Start/End: Complemental strand, 27494292 - 27494194
Alignment:
Q  463 atagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgctt 562  Q
    |||||||||| |||||||||| ||| |||||| ||||   ||| ||||  ||| ||||||||||||||||||||||| |||||||| |||||||| ||||    
T  27494292 atagcaatgttatgtctcctaagtctatgaatattgt---gtttacgaatattggttttgccatccaaaaaggtctaacggcgcagcttgttgcctgctt 27494196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 34814908 - 34814967
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggt 486  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  34814908 ctgttgaccttctacatagagttcaaatggtcatgcataacaatgttatgtctcttaggt 34814967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 427 - 562
Target Start/End: Original strand, 11921300 - 11921426
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccat 526  Q
    ||||||||||||||||||||||||||| ||| ||      |||| | || ||| |||||||||||||||||||   ||| || |||||| |||| |||||    
T  11921300 ctgttgaccttctacatagagttcaaagggttat------caattttatatcttctaggtccatgaatgttgt---gtttactaggattagtttcgccat 11921390  T
Q  527 ccaaaaaggtctagcggcgcagtttgttgcccgctt 562  Q
    |||||||| ||||||| ||||| ||||| |||||||    
T  11921391 ccaaaaagatctagcgtcgcagcttgttacccgctt 11921426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 23485038 - 23485098
Alignment:
Q  439 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||||||||| ||||||||| |||||  |||||||||||||||||||| |||||    
T  23485038 tacatagagttcaaaagatcatgcataacaatgctatgtctcctaggtccatgaacgttgt 23485098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 32029172 - 32029228
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtct 479  Q
    |||||||||||||||||||||||||||||||  ||||| |||| |||||||||||||    
T  32029172 gaggctgttgaccttctacatagagttcaaagagtcatccataacaatgtcatgtct 32029228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 3825742 - 3825671
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||| |||| |||||||||   ||||||||||||||||||||||| ||||| |||| ||||||||    
T  3825742 tgttgaccttcaacatcgagttcaaagaatcatgcatagcaatgtcatgtcttctaggaccataaatgttgt 3825671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 480
Target Start/End: Original strand, 7760931 - 7760988
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctc 480  Q
    |||| |||||||||||||||||||||||||| | |||||| ||||||||| |||||||    
T  7760931 gaggttgttgaccttctacatagagttcaaaggatcatgcgtagcaatgtgatgtctc 7760988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 30602429 - 30602376
Alignment:
Q  507 acgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgc 560  Q
    ||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||    
T  30602429 acgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgc 30602376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 499
Target Start/End: Original strand, 44684955 - 44685020
Alignment:
Q  434 ccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||||||||||||||| ||||||||||| |||| | ||||||  || |||||||||||||||    
T  44684955 ccttctacatagagttcaaagggtcatgcataacaatattatgtcttataagtccatgaatgttgt 44685020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 2886701 - 2886776
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||| ||| |||||||||||||||||  ||||||||||||| |||| |||| | ||||||| ||||||||    
T  2886701 gaggctgttgatcttttacatagagttcaaaagagcatgcatagcaatatcatatctcgt-ggtccataaatgttgt 2886776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 5532436 - 5532368
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgt 496  Q
    |||||| ||||||||||||||||||| ||||||||| | ||||| |||| |||||| || |||||||||    
T  5532436 tgttgagcttctacatagagttcaaagggtcatgcacaacaatgccatgactcctaagttcatgaatgt 5532368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 555
Target Start/End: Original strand, 1296175 - 1296292
Alignment:
Q  435 cttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaag 534  Q
    ||||||| ||||||||||| |||||||||||| ||| |||||| ||||  ||| |||||   |||| |||| | ||| ||| ||||| | ||||||||||    
T  1296175 cttctacgtagagttcaaagggtcatgcatagtaatatcatgtttcctgtgtctatgaa---tgttttgtttatgagaattggttttacaatccaaaaag 1296271  T
Q  535 gtctagcggcgcagtttgttg 555  Q
    |||||  || |||||||||||    
T  1296272 gtctaaaggtgcagtttgttg 1296292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 41702209 - 41702155
Alignment:
Q  510 aggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||| ||||||||||||||||||| |||| ||||||| ||||||||| |||||    
T  41702209 aggattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgc 41702155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 32612329 - 32612386
Alignment:
Q  507 acgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||| |||||||||||  ||||||||  ||| |||||||||||||||||||||    
T  32612329 acgaggattggttttgccatctgaaaaggtccggcgacgcagtttgttgcccgcttgc 32612386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 488
Target Start/End: Original strand, 8036568 - 8036635
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgc--atagcaatgtcatgtctcctaggtcc 488  Q
    |||| |||||||||| ||||||||||||||| | | ||||  ||| ||||||||||||||||||||||    
T  8036568 gaggttgttgaccttttacatagagttcaaaggtttatgcatatatcaatgtcatgtctcctaggtcc 8036635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 42122768 - 42122716
Alignment:
Q  496 ttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcag 548  Q
    |||| ||||| ||||||| | ||||||||||||||||| ||||||||||||||    
T  42122768 ttgtcgtgtttacgaggactggttttgccatccaaaaaagtctagcggcgcag 42122716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 24765255 - 24765208
Alignment:
Q  450 caaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 497  Q
    |||| |||||| |||| |||||||||||||| ||||||||||||||||    
T  24765255 caaagggtcatccataacaatgtcatgtctcttaggtccatgaatgtt 24765208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 547
Target Start/End: Original strand, 20143122 - 20143152
Alignment:
Q  517 gttttgccatccaaaaaggtctagcggcgca 547  Q
    |||||||||||||||||||||||||||||||    
T  20143122 gttttgccatccaaaaaggtctagcggcgca 20143152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 487
Target Start/End: Original strand, 20142871 - 20142904
Alignment:
Q  454 aggtcatgcatagcaatgtcatgtctcctaggtc 487  Q
    |||||||||||| |||||||||||||||||||||    
T  20142871 aggtcatgcataacaatgtcatgtctcctaggtc 20142904  T

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Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 496
Target Start/End: Complemental strand, 29808096 - 29808023
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgt 496  Q
    |||| |||||||||| ||||||||||| ||  ||||||||| | |||  |||||  ||||||||||||||||||    
T  29808096 gaggttgttgaccttttacatagagtttaagtggtcatgcacaacaacatcatgaatcctaggtccatgaatgt 29808023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 33612670 - 33612707
Alignment:
Q  462 catagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  33612670 catagcaatgtcttgtcccctaggtccatgaatgttgt 33612707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 3330017 - 3329879
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| |||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||   || |||||| |||| |||| ||||||    
T  3330017 gaggcagttgaccttctacatagagtccaaagggttatgcatagcaatgttatgtctcctaggtccatgaa---tgctgtgtttacgatgattggttttg 3329921  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  3329920 ccatccaaaaaggtctagcggcgcagcttgttgcccgcttgc 3329879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 39001418 - 39001280
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| |||||||||||||||||||| |||| | | ||||||| ||||||  |||||||||||||||||||||||||   ||| ||||||||| ||||||    
T  39001418 gaggcagttgaccttctacatagagtccaaaggattatgcataacaatgttgtgtctcctaggtccatgaatgttgt---gtttacgaggattggttttg 39001322  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  39001321 tcatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 39001280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 4419284 - 4419147
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||   ||||||| |||| |||| ||||||    
T  4419284 gaggttgttgaccttctacatagagttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatg---ttgtgtttacgatgattggttttg 4419188  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  4419187 ccatccaaaaa-atctagcggcgcagcttgttgcccgcttgc 4419147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 436 - 564
Target Start/End: Original strand, 30940831 - 30940956
Alignment:
Q  436 ttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaagg 535  Q
    |||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||   ||||||||||| |||||||  ||||||||||||||||||    
T  30940831 ttctacatagagttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaa---tgttgtgttcatgaggattgattttgccatccaaaaagg 30940927  T
Q  536 tctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||| ||||| |||||||||||||||    
T  30940928 tctagcgacgcagcttgttgcccgcttgc 30940956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 423 - 563
Target Start/End: Original strand, 34107782 - 34107919
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||   ||||||||||||||||||| ||||||    
T  34107782 gaggctgttgaccttctacatagagttcaaaaagtcatgcataacaatgttatgtctcctagatccatgaa---tgttgtgttcacgaggattggttttg 34107878  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
     |||||||||| || || |||| ||| ||||||||| ||||    
T  34107879 tcatccaaaaaagtttaacggcacagcttgttgcccacttg 34107919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 26521509 - 26521372
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||| ||||||    ||||||||| ||||||||| ||||||    
T  26521509 gaggctgttgaccttctacatacagttcaaagggtcatgcgtagcaatgtcatgtatcctaggcccatga----tgttgtgtttacgaggattggttttg 26521414  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
     ||||||||||||| ||||||| ||| || ||| ||||||||    
T  26521413 tcatccaaaaaggtttagcggcacagctttttgtccgcttgc 26521372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 423 - 557
Target Start/End: Complemental strand, 53619607 - 53619476
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| ||||||||||||||||||||  ||| ||| ||||||| |||||| ||||||| ||||||||||||||||||   ||| ||||| ||| ||||||    
T  53619607 gaggcagttgaccttctacatagagtctaaagggttatgcataacaatgttatgtctcttaggtccatgaatgttgt---gtttacgagaattggttttg 53619511  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcc 557  Q
    |||||||||||||||||||||||||| ||||||||    
T  53619510 ccatccaaaaaggtctagcggcgcagcttgttgcc 53619476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 431 - 564
Target Start/End: Complemental strand, 16955473 - 16955343
Alignment:
Q  431 tgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaa 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||| |||||||||  ||| |||||| ||    
T  16955473 tgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatg---ttgtgtttacgaggattgatttggccatcaaa 16955377  T
Q  531 aaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||| ||   || |||||||||||| ||||||||    
T  16955376 aaagatccgacgacgcagtttgttgtccgcttgc 16955343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 50001012 - 50001150
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| |||||||||||||||| ||| |||| ||| |||||||||||||| ||||||||||| ||||| ||   ||||||||| |||| ||||  |||||    
T  50001012 gaggcagttgaccttctacatatagtccaaagggttatgcatagcaatgttatgtctcctagatccataaa---tgttgtgtttacgaagattgattttg 50001108  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  50001109 ccatccaaaaagatctagcggcgcagcttgttgcccgcttgc 50001150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 423 - 541
Target Start/End: Complemental strand, 53170534 - 53170418
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcc--taggtccatgaatgttgttgtgttcacgaggatttgttt 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||   |||||||||||||||||||  |||    
T  53170534 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctataggt-catgaa---tgttgtgttcacgaggattgattt 53170439  T
Q  521 tgccatccaaaaaggtctagc 541  Q
    ||| ||| |||||||||||||    
T  53170438 tgctatctaaaaaggtctagc 53170418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 600778 - 600916
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||   || |||||| |||| |||| ||||||    
T  600778 gaggttgttgaccttctacatagagttcaaaaggtcatgtataactatgtcatgtctcctaggtccattaa---tgctgtgtttacgatgattagttttg 600874  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||| || ||||| || || |||||| ||||||||    
T  600875 ccatccaaaaatgtatagcgacgtagcttgttgtccgcttgc 600916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 424 - 562
Target Start/End: Complemental strand, 23255733 - 23255598
Alignment:
Q  424 aggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgc 523  Q
    |||| |||||||||||||||||||| |||| ||| ||||||| |||||| |||||||||| |||||||||   | ||||||| |||||||||  ||||||    
T  23255733 aggcagttgaccttctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaa---tattgtgtttacgaggattgattttgc 23255637  T
Q  524 catccaaaaaggtctagcggcgcagtttgttgcccgctt 562  Q
    |||||| ||| |||||||||||||| |||||| ||||||    
T  23255636 catccagaaaagtctagcggcgcagcttgttgtccgctt 23255598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 428 - 564
Target Start/End: Original strand, 50464387 - 50464520
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||| |  |  |||||   ||||||||| |||||||||| ||||||||||    
T  50464387 tgttgaccttctacgtagagtttaaagggtcatgcataacaatgtcatgtctcccaaatatatgaa---tgttgtgtttacgaggatttattttgccatc 50464483  T
Q  528 caaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||  |||||||||||| |||||| ||||||||    
T  50464484 caaaaagacctagcggcgcagcttgttgtccgcttgc 50464520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 428 - 564
Target Start/End: Original strand, 55933551 - 55933684
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    ||||||||||||||||||||| |||| ||| || |||| |||| | ||||||||||||||| ||||   ||||||||| |||| ||||  ||||||||||    
T  55933551 tgttgaccttctacatagagtccaaagggttatacataacaatattatgtctcctaggtccgtgaa---tgttgtgtttacgatgattgattttgccatc 55933647  T
Q  528 caaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||| |||||||| |||||||||||| ||||||||    
T  55933648 caaaaaagtctagcgacgcagtttgttgtccgcttgc 55933684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 476 - 564
Target Start/End: Complemental strand, 31847071 - 31846986
Alignment:
Q  476 gtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||||||||||||||   |||  |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||    
T  31847071 gtctcctaggtccatgaatgttgt---gttagcgaggattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgc 31846986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 427 - 536
Target Start/End: Complemental strand, 25504312 - 25504206
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccat 526  Q
    ||||||||||| || |||||||| |||||||||||||||| ||||||||||||| ||||||||||||   | ||||||| | |||||||  |||||||||    
T  25504312 ctgttgaccttttaaatagagtttaaaaggtcatgcatagtaatgtcatgtctcataggtccatgaa---tattgtgtttatgaggattgcttttgccat 25504216  T
Q  527 ccaaaaaggt 536  Q
     |||||||||    
T  25504215 tcaaaaaggt 25504206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 555
Target Start/End: Original strand, 38535655 - 38535783
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||| ||| |||||||||||||||||  ||||||||||||||||||||||||  ||||||||||   | ||||||||| ||||||||| ||||||    
T  38535655 gaggttgttcaccctctacatagagttcaaagagtcatgcatagcaatgtcatgtcttataggtccatg---gatgttgtgtttacgaggattagttttg 38535751  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttg 555  Q
     ||||||||| || |||| ||| || |||||||    
T  38535752 -catccaaaacggcctagtggcacaatttgttg 38535783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 564
Target Start/End: Original strand, 50463036 - 50463167
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccat 526  Q
    ||||||||||||||| ||||||| ||| || |||||||| ||||| ||||||||| | ||  ||||      ||||||| ||||||||||||||||||||    
T  50463036 ctgttgaccttctacgtagagtttaaagggccatgcataacaatgccatgtctcccaagtatatga------ttgtgtttacgaggatttgttttgccat 50463129  T
Q  527 ccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||  |||||||||||| ||| || ||||||||    
T  50463130 ccaaaaagacctagcggcgcagcttgctgtccgcttgc 50463167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 56462192 - 56462268
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| |||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| |||||| ||||||||    
T  56462192 gaggttgttgaccttctacatagagttcaaaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgt 56462268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 423 - 500
Target Start/End: Original strand, 42455693 - 42455770
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtt 500  Q
    |||| |||| ||||||||||||||||||||| | ||||| ||| ||||||||||| | ||||||||||||||||||||    
T  42455693 gaggttgttaaccttctacatagagttcaaatgatcatggataacaatgtcatgttttctaggtccatgaatgttgtt 42455770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 509 - 564
Target Start/End: Original strand, 40392723 - 40392778
Alignment:
Q  509 gaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||    
T  40392723 gaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgc 40392778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 423 - 497
Target Start/End: Original strand, 7536657 - 7536731
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 497  Q
    |||| |||||||||||||||||||||||||| | || ||||||||||| | ||||||| ||| ||||||||||||    
T  7536657 gaggttgttgaccttctacatagagttcaaatgatcgtgcatagcaattttatgtctcgtagatccatgaatgtt 7536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 564
Target Start/End: Original strand, 32312803 - 32312940
Alignment:
Q  429 gttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgt--tgttgtgttcacgaggatttgttttgccat 526  Q
    ||||| ||| |||| |||||||||||||||||||||| ||||||  ||||| |||| || ||||||||  |||||| |||| ||||||| ||||||||||    
T  32312803 gttgatcttatacaaagagttcaaaaggtcatgcataacaatgtagtgtcttctagatctatgaatgttgtgttgttttcaggaggattggttttgccat 32312902  T
Q  527 ccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
      ||||||   |||||||| |  |||||||||| ||||    
T  32312903 ttaaaaagaattagcggcgtatcttgttgcccgtttgc 32312940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 50442609 - 50442702
Alignment:
Q  467 caatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    |||||| ||||||||||||| |||| |||||||   ||| | ||||||| |||||||||||||||||||  ||| ||||||| ||||||||||||||    
T  50442609 caatgttatgtctcctaggttcatggatgttgt---gtttaagaggattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgcttg 50442702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 497
Target Start/End: Original strand, 6865911 - 6865979
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgtt 497  Q
    |||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||    
T  6865911 tgttaaccttttacatagagttcaaagggtaatgcatagcaatgtcatgtctcctagat-catgaatgtt 6865979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 46391400 - 46391474
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| ||||||||||||||||| |||||||||| ||||||  | |||||||||||||||||  ||||||||||||||    
T  46391400 gaggttgttgaccttctacataaagttcaaaagatcatgc--aacaatgtcatgtctcctaaatccatgaatgttgt 46391474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 434 - 540
Target Start/End: Original strand, 48657012 - 48657115
Alignment:
Q  434 ccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaa 533  Q
    ||||||||||||||| |||| | | |||||||||||||| ||||||| |||||| |||||   ||||||||| |||| ||||  ||||||| ||||||||    
T  48657012 ccttctacatagagtccaaatgattatgcatagcaatgttatgtctcataggtctatgaa---tgttgtgtttacgatgattgattttgccgtccaaaaa 48657108  T
Q  534 ggtctag 540  Q
    | |||||    
T  48657109 gatctag 48657115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 564
Target Start/End: Complemental strand, 45661699 - 45661574
Alignment:
Q  436 ttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaagg 535  Q
    ||||||||| |||||||| |||||| || | |||||||||  ||| ||||||||||||   | ||||||| ||||||||| ||||| | ||||||||||     
T  45661699 ttctacataaagttcaaagggtcatacacaacaatgtcataactcgtaggtccatgaa---tattgtgtttacgaggattggttttactatccaaaaaga 45661603  T
Q  536 tctagcggcgcagtttgttgcccgcttgc 564  Q
     ||| |||  ||||||||||| |||||||    
T  45661602 cctaacggtacagtttgttgcacgcttgc 45661574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 54190937 - 54191013
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| ||||||||||| |||||||||||||| || |||||||| |||||||||| ||| || |||||| ||| ||||    
T  54190937 gaggttgttgaccttccacatagagttcaaagggccatgcataacaatgtcatgactcttaagtccataaatattgt 54191013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 747855 - 747898
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatag 466  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  747855 gaggttgttgaccttctacatagagtttaaaaggtcatgcatag 747898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 538
Target Start/End: Original strand, 18981651 - 18981735
Alignment:
Q  449 tcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtct 538  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||   ||||||||| |||| || ||| |||||||||||||| |||||    
T  18981651 tcaaagggtcatgcatagtaatgtcatgtct-ctaggtccatgaa---tgttgtgtttacgatga-ttggtttgccatccaaaatggtct 18981735  T

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Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 28739921 - 28739850
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||||| ||||||||||||||   |  ||||||| |||||| ||||||||||||||||| ||||||||    
T  28739921 tgttgaccttttacatagagttcaacgtgcaatgcataacaatgttatgtctcctaggtccataaatgttgt 28739850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 34213635 - 34213565
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||||| |||||||||||| |||||||| || ||||||  | |||||||| ||||||||||||||    
T  34213635 tgttgaccttctagatagagttcaaagggtcatgcctaacaatgt-gtctctcctagttccatgaatgttgt 34213565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 554
Target Start/End: Complemental strand, 8738203 - 8738098
Alignment:
Q  446 agttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcg 545  Q
    |||||||| | |||||||||  ||||||||||||| ||||| ||||||||||||   ||  || | ||||  ||||| |||||||||| || ||||||||    
T  8738203 agttcaaaggctcatgcataaaaatgtcatgtctcttaggttcatgaatgttgt---gtatacaaagattgattttgtcatccaaaaaagtttagcggcg 8738107  T
Q  546 cagtttgtt 554  Q
    |||||||||    
T  8738106 cagtttgtt 8738098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 461
Target Start/End: Original strand, 50483282 - 50483320
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatg 461  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  50483282 gaggttgttgaccttctacatagagttcaaaaggtcatg 50483320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 535
Target Start/End: Original strand, 49354160 - 49354265
Alignment:
Q  431 tgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaa-tgttgttgtgttcacgaggatttgttttgccatcca 529  Q
    ||||||||| |||||| || ||| |||||| ||||||||||| ||||||||||  |||||||| |  ||||||||| |||| ||||  ||||| | ||||    
T  49354160 tgaccttctgcatagaatttaaatggtcattcatagcaatgtaatgtctcctaaatccatgaattaatgttgtgtttacgatgattgattttgtcgtcca 49354259  T
Q  530 aaaagg 535  Q
    ||||||    
T  49354260 aaaagg 49354265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 132401 - 132330
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||| ||||||| |||||| ||| ||||| ||||| |||||||||||||  ||||| ||||| ||||||    
T  132401 tgttgacattctacacagagtttaaagggtcaagcataacaatgtcatgtcttttaggttcatgattgttgt 132330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 712679 - 712722
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatag 466  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||    
T  712679 gaggttgttgtccttctacatagagtttaaaaggtcatgcatag 712722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 46440978 - 46441045
Alignment:
Q  426 gctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaa 493  Q
    |||| |||||||||||||||||| |||| |||  ||||||||||||  ||||||| ||||| ||||||    
T  46440978 gctgctgaccttctacatagagtccaaagggttgtgcatagcaatgctatgtctcataggttcatgaa 46441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 499
Target Start/End: Original strand, 23233211 - 23233276
Alignment:
Q  433 accttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||| ||||||||||  |||||||||||  |||||||||| |||||| | ||||||||||||    
T  23233211 accttctacgtagagttcaag-ggtcatgcataataatgtcatgtttcctagattcatgaatgttgt 23233276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 547
Target Start/End: Complemental strand, 23605059 - 23604990
Alignment:
Q  475 tgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgca 547  Q
    |||||||||| ||||||||| ||||  ||||   |||||||  ||||| ||||||||||||||||||||||||    
T  23605059 tgtctcctagatccatgaatattgtgttgtt---gaggattgattttgtcatccaaaaaggtctagcggcgca 23604990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 557
Target Start/End: Complemental strand, 2852385 - 2852325
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcc 557  Q
    |||||||||||| |||||| |||||  ||| ||||||||  ||||||||||| ||||||||    
T  2852385 tgttgtgttcacaaggattggttttttcattcaaaaaggcttagcggcgcagcttgttgcc 2852325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 32755784 - 32755832
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatg 471  Q
    |||||||| || |||||||| ||||||| || |||||||||||||||||    
T  32755784 gaggctgtggatcttctacaaagagttccaacggtcatgcatagcaatg 32755832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 494
Target Start/End: Original strand, 49344232 - 49344296
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaat 494  Q
    ||||||| ||||||| |||| ||| |||||  ||||| ||||| ||||||||||| |||||||||    
T  49344232 ttgacctcctacatatagtttaaagggtcactcatagaaatgtaatgtctcctagatccatgaat 49344296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 436 - 564
Target Start/End: Original strand, 2566194 - 2566319
Alignment:
Q  436 ttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaagg 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||   ||||||||| |||||||||  ||||||||||||||||||    
T  2566194 ttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatcaa---tgttgtgtttacgaggattgattttgccatccaaaaagg 2566290  T
Q  536 tctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||||  ||||||||| |||||    
T  2566291 tctagcggcgcaacttgttgcccacttgc 2566319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 42921718 - 42921581
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |    | ||||||| || |||||| ||||||    
T  42921718 gaggttgttggccttctacatagagttcagaaggtcatgcataacaatgtcatgtctcctaagtccataa----tattgtgtttacaaggattggttttg 42921623  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||    
T  42921622 ccatccaaaaagatctagcggcgcagcttgtttcccacttgc 42921581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 423 - 540
Target Start/End: Original strand, 22188741 - 22188855
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||   ||||||||| ||||| ||| ||||||    
T  22188741 gaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatatcatgtctcctagattcatgaa---tgttgtgtttacgagaattggttttg 22188837  T
Q  523 ccatccaaaaaggtctag 540  Q
     |||||||||| ||||||    
T  22188838 tcatccaaaaaagtctag 22188855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 32269883 - 32270020
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||  ||| |    
T  32269883 gaggttgttgaccttctgcatgaagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaa---tgttgtgtttacgaggattgatttcg 32269979  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||||| |  |||||| |||| ||||| |||||||||    
T  32269980 ccatccaaaaaagcatagcgg-gcagcttgttacccgcttgc 32270020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 35310469 - 35310331
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||||||| |||||||||||||||| |||| |||  |||||| |||||| ||||||||||||||||||||||   ||||||| ||||| ||| ||||||    
T  35310469 gaggctgttaaccttctacatagagtccaaagggttttgcatatcaatgttatgtctcctaggtccatgaatg---ttgtgtttacgagaattggttttg 35310373  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||| |||| || || ||||| |||||||||||||||    
T  35310372 ccatccaaagaggtttaacgacgcagcttgttgcccgcttgc 35310331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 423 - 553
Target Start/End: Complemental strand, 430623 - 430496
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| |||||||||||||||||| | |||| ||| |||||||| ||||| ||||||||||||||||||||||   ||||||| |||||||||  || ||    
T  430623 gaggcagttgaccttctacatagattccaaagggttatgcatagtaatgttatgtctcctaggtccatgaatg---ttgtgtttacgaggattgattatg 430527  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgt 553  Q
    ||||||||||||||||| ||| |||| ||||    
T  430526 ccatccaaaaaggtctatcggtgcagcttgt 430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 446 - 564
Target Start/End: Original strand, 15292134 - 15292249
Alignment:
Q  446 agttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcg 545  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||   ||||||||| | |||||||  |||||||||||||||| |  | ||||||    
T  15292134 agttcaaaaggtcatgcatagcaatgtcacatctcctaggtccatgaa---tgttgtgtttatgaggattgattttgccatccaaaaaagcttggcggcg 15292230  T
Q  546 cagtttgttgcccgcttgc 564  Q
    ||||||||||||| |||||    
T  15292231 cagtttgttgcccacttgc 15292249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 427 - 564
Target Start/End: Original strand, 13167000 - 13167134
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccat 526  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||  |||||||||||||||||||||||||    ||| |||| ||||  || ||  ||    
T  13167000 ctgttgaccttctacatagagtccaaagggttatgcatagcaatggtatgtctcctaggtccatgaatgttgg---gtttacgatgattgattctgttat 13167096  T
Q  527 ccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||| ||||||||||||| ||||||||| |||||    
T  13167097 ccaaaaagatctagcggcgcagcttgttgcccacttgc 13167134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 423 - 550
Target Start/End: Complemental strand, 14423703 - 14423584
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||||||||||||||||||||||||   ||||| || |||| |||||||||||||| ||||||||| ||     |||||||||| |||||| ||||||    
T  14423703 gaggctgttgaccttctacatagagtt---aaggtaattcataacaatgtcatgtctcttaggtccataaa-----ttgtgttcacaaggattggttttg 14423612  T
Q  523 ccatccaaaaaggtctagcggcgcagtt 550  Q
    |||||||||||| |||||||| ||||||    
T  14423611 ccatccaaaaagatctagcggtgcagtt 14423584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 423 - 565
Target Start/End: Original strand, 26212669 - 26212808
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||||| || |||||||||||||||||||||| |||||| || ||||| | |||||||||| ||||||||||||||||   |||| ||||||| ||||||    
T  26212669 gaggctattaaccttctacatagagttcaaaatgtcatgtatggcaatattatgtctcctaagtccatgaatgttgtt---ttcatgaggattggttttg 26212765  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgct 565  Q
    || ||| ||||| ||||| | |||| | | |||||||||||||    
T  26212766 ccttccgaaaagatctagtgacgcaatatattgcccgcttgct 26212808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 423 - 563
Target Start/End: Complemental strand, 27336714 - 27336579
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| |||||||||||||||||||   ||| ||| ||| |||||||||| |||||||||| ||||||||||||||||   || || ||||||  |||||    
T  27336714 gaggcagttgaccttctacatagaga--aaatggttatgtatagcaatgttatgtctcctaagtccatgaatgttgtt---tttacaaggattgattttg 27336620  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    ||||| ||||||||||||||| ||||||| ||| |||||||    
T  27336619 ccatcaaaaaaggtctagcggtgcagtttattgtccgcttg 27336579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 428 - 556
Target Start/End: Original strand, 25663123 - 25663248
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||| |||||||||||||| |||| ||| ||||||| |||||| ||||| ||||||||||||||   ||||| ||| ||||||||| | |||| ||||    
T  25663123 tgttgatcttctacatagagtccaaagggttatgcatatcaatgttatgtcccctaggtccatgaa---tgttgagtttacgaggattggctttgtcatc 25663219  T
Q  528 caaaaaggtctagcggcgcagtttgttgc 556  Q
    |||||||||||| || ||||| |||||||    
T  25663220 caaaaaggtctaacgacgcagcttgttgc 25663248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 543
Target Start/End: Original strand, 37873724 - 37873841
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||| ||||||||| | |||||||||| || ||||||| |||||   ||||||||| | |||||||  |||||    
T  37873724 gaggttgttgaccttctacatagagttcaaagggtcatgcagaacaatgtcatgacttctaggtctatgaa---tgttgtgtttaagaggattgattttg 37873820  T
Q  523 ccatccaaaaaggtctagcgg 543  Q
    | ||| ||||||| |||||||    
T  37873821 ctatcaaaaaaggcctagcgg 37873841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 448 - 547
Target Start/End: Complemental strand, 23023591 - 23023495
Alignment:
Q  448 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgca 547  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||   ||||||| |||| ||||  ||||| |||||||||||| |||| ||||||    
T  23023591 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatg---ttgtgtttacgaagattgattttgtcatccaaaaaggcctaggggcgca 23023495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 423 - 492
Target Start/End: Complemental strand, 38875659 - 38875590
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatga 492  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  38875659 gaggctgctgaccttctacgtagagttcaaaaggtcatgcataacaatgtcttgtctcctaggtcaatga 38875590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 564
Target Start/End: Original strand, 33692145 - 33692276
Alignment:
Q  427 ctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccat 526  Q
    ||||||||||||||||||| || |||| ||| ||||||| |||||| ||||||| ||||| ||||||   |||| |||| ||||   || ||||| ||||    
T  33692145 ctgttgaccttctacatagtgtccaaagggt-atgcataacaatgttatgtctcataggttcatgaa---tgttctgtttacga--tttggtttttccat 33692238  T
Q  527 ccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||| ||||||||||||| |||||||| ||||||    
T  33692239 ccaaaaagatctagcggcgcagcttgttgcctgcttgc 33692276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 518 - 564
Target Start/End: Original strand, 2917539 - 2917585
Alignment:
Q  518 ttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  2917539 ttttgccatccaaaaaggtctagcggcgcagtttgttgcctgcttgc 2917585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 524
Target Start/End: Complemental strand, 15810052 - 15809972
Alignment:
Q  442 atagagttcaaaa-ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgcc 524  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||   ||| |||||||||||||||  |||||||    
T  15810052 atagagttcaaaatggtcatgtatagcaatgtcatgtctcctaggcccatgaa---tgtcgtgttcacgaggattgattttgcc 15809972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 500 - 564
Target Start/End: Complemental strand, 11005825 - 11005761
Alignment:
Q  500 tgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||| || |||||| |||||||||||||||||||  ||||||||||| |||||||||||||||    
T  11005825 tgtgtttactaggattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgcttgc 11005761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 524
Target Start/End: Complemental strand, 15833069 - 15832985
Alignment:
Q  437 tctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgcc 524  Q
    |||| |||||||||||| ||||||| ||| |||||||| ||||||||| | ||||||   ||| ||||||||||||||| ||||||||    
T  15833069 tctatatagagttcaaatggtcatgtataacaatgtcacgtctcctagattcatgaa---tgtcgtgttcacgaggattagttttgcc 15832985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 484
Target Start/End: Complemental strand, 34335358 - 34335297
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctag 484  Q
    ||||||||||||||||||||||||||||||  | |||||| || |||| |||||||||||||    
T  34335358 gaggctgttgaccttctacatagagttcaacggatcatgcgtaacaatctcatgtctcctag 34335297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 500
Target Start/End: Complemental strand, 24113571 - 24113519
Alignment:
Q  448 ttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtt 500  Q
    |||||| | ||||||||| ||||||||||||| ||||||||||||||||||||    
T  24113571 ttcaaatgatcatgcataacaatgtcatgtcttctaggtccatgaatgttgtt 24113519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 555
Target Start/End: Complemental strand, 8100573 - 8100446
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||| ||||||| |||   ||||||||| ||||||||||||| |||||| | | ||||||||| ||    ||| ||||  |||||    
T  8100573 gaggttgttgaccttctacgtagagtttaaagattcatgcatatcaatgtcatgtcttctaggt-cgtaaatgttgttttg----cgatgattgattttg 8100479  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttg 555  Q
    ||||||||||| | |||| ||||||| ||||||    
T  8100478 ccatccaaaaaagcctagtggcgcagcttgttg 8100446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 556
Target Start/End: Original strand, 15506721 - 15506831
Alignment:
Q  443 tagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcg 542  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||  | | |||   ||||||||| |||||||||  |||| ||||| ||||||| ||| ||    
T  15506721 tagagtttaaaaggttatgtatagcaatgtcatgtctcctagacctacgaa---tgttgtgtttacgaggattgattttaccatcaaaaaaggcctaacg 15506817  T
Q  543 gcgcagtttgttgc 556  Q
    |||||  |||||||    
T  15506818 gcgcaacttgttgc 15506831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 486
Target Start/End: Complemental strand, 16017173 - 16017131
Alignment:
Q  444 agagttcaaaaggtcatgcatagcaatgtcatgtctcctaggt 486  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  16017173 agagttcaaaaggtcatgcatagcaatgttgtgtctcctaggt 16017131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 495
Target Start/End: Complemental strand, 27294459 - 27294387
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatg 495  Q
    |||| ||||||||||||||||| |||||||| ||||| | ||| |||  | |||||| |||||||||||||||    
T  27294459 gaggttgttgaccttctacatatagttcaaatggtcacgtataacaacattatgtcttctaggtccatgaatg 27294387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 483
Target Start/End: Original strand, 23423962 - 23424017
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctccta 483  Q
    ||||||||||||||||||| |||||| | |||| ||| |||||||||||| |||||    
T  23423962 tgttgaccttctacatagatttcaaaggatcattcattgcaatgtcatgtatccta 23424017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 19260318 - 19260269
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtct 479  Q
    |||||||||||| ||||||||||| |||||| |||| |||||| ||||||    
T  19260318 ttgaccttctacttagagttcaaagggtcatacataacaatgtaatgtct 19260269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 17249391 - 17249529
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    ||||| |||||||||||||||||||| |||| | | ||| |||||||||| |||||||||| || ||||||||||||   ||| ||||||||| ||||||    
T  17249391 gaggcagttgaccttctacatagagtccaaaggattatgtatagcaatgttatgtctcctaagttcatgaatgttgt---gtttacgaggattggttttg 17249487  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  17249488 ccatccaaaaaggtctagcggcgcagcttgttgcccgcttgc 17249529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 425 - 543
Target Start/End: Complemental strand, 32115737 - 32115622
Alignment:
Q  425 ggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgcc 524  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||| |||| ||||  ||||||     
T  32115737 ggctgttgaccttctacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatg---ttgtgtttacgatgattgattttgct 32115641  T
Q  525 atccaaaaaggtctagcgg 543  Q
    ||| |||||||||||||||    
T  32115640 atctaaaaaggtctagcgg 32115622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 564
Target Start/End: Original strand, 33220797 - 33220935
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||| ||| |||| ||| ||||||||||||||  ||||| ||||||||||||||||||    ||| ||||  ||| ||||||    
T  33220797 gaggttgttgaccttctacatatagtccaaagggttatgcatagcaatgttgtgtcttctaggtccatgaatgttgc---gtttacgataattggttttg 33220893  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||| ||||||||||||||||||| |||||| ||||||||    
T  33220894 ccatcctaaaaggtctagcggcgcagcttgttggccgcttgc 33220935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 564
Target Start/End: Original strand, 3137365 - 3137471
Alignment:
Q  455 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgtt 554  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||| |||||||||||||||||||  |||| | |||  |||||    
T  3137365 ggtcatgcatagcaatgtcatgtctcctaggtccatgaa---tgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 3137461  T
Q  555 gcccgcttgc 564  Q
    ||||| ||||    
T  3137462 gcccgtttgc 3137471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 423 - 532
Target Start/End: Original strand, 4206682 - 4206788
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||| |||||   | | ||||| ||||||||| ||||||    
T  4206682 gaggttgttgaccttctacatagagttcaaaaggtcatgcatgacaatgtcatgtcacctaggtcaatgaa---tatagtgtttacgaggattggttttg 4206778  T
Q  523 ccatccaaaa 532  Q
    ||||||||||    
T  4206779 ccatccaaaa 4206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 535
Target Start/End: Complemental strand, 959601 - 959493
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||| || |||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||| |||||||||  |||||    
T  959601 gaggttgttgaccttctacgta-agttcaaaaggtcatgcatagcaatgttgtgtctcctaggtccatgaatg---ttgtgtttacgaggattgattttg 959506  T
Q  523 ccatccaaaaagg 535  Q
     |||| |||||||    
T  959505 tcatctaaaaagg 959493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 428 - 559
Target Start/End: Complemental strand, 34304512 - 34304384
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    ||||||||||||||||||||| ||||  || |||||||||||| ||||||||| |||||| |||||||   |||| || |||||||||  |||||| |||    
T  34304512 tgttgaccttctacatagagtccaaagagttatgcatagcaatatcatgtctcataggtctatgaatg---ttgtatttacgaggattgattttgcaatc 34304416  T
Q  528 caaaaaggtctagcggcgcagtttgttgcccg 559  Q
    ||||||||| ||||||| ||  ||||||||||    
T  34304415 caaaaaggtatagcggcacaaattgttgcccg 34304384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 45763 - 45819
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtct 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45763 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgttatgtct 45819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 423 - 532
Target Start/End: Original strand, 4166008 - 4166114
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||||||||||||||||||| ||||||||||||||  |||||||||||| |||||||| || ||   | | ||||| ||||||||| ||||||    
T  4166008 gaggttgttgaccttctacatagagtttaaaaggtcatgcatgacaatgtcatgtcacctaggtcaataaa---tatagtgtttacgaggattggttttg 4166104  T
Q  523 ccatccaaaa 532  Q
    ||||||||||    
T  4166105 ccatccaaaa 4166114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 563
Target Start/End: Original strand, 29338171 - 29338302
Alignment:
Q  429 gttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatcc 528  Q
    ||||||||||||||||  ||||||| ||||||||| | |||||||||| ||||||||||||||||   ||||||||| || ||||||  |||| | ||||    
T  29338171 gttgaccttctacatatggttcaaagggtcatgcacatcaatgtcatgactcctaggtccatgaa---tgttgtgtttacaaggattgatttttctatcc 29338267  T
Q  529 aaaaaggtctagcggcgcagtttgttgcccgcttg 563  Q
    |||| || ||||| | |||| ||||||||| ||||    
T  29338268 aaaatggcctagcagtgcagcttgttgcccacttg 29338302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 497 - 564
Target Start/End: Complemental strand, 7749431 - 7749364
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||    
T  7749431 tgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgc 7749364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 28625951 - 28625830
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| |||||| |||||||||| |||||||||||||||||||| || |||||| |||| |||||| |||||||||||   ||| |||  ||||  |||||    
T  28625951 gaggttgttgagcttctacataaagttcaaaaggtcatgcataaca-tgtcatatctcataggtctatgaatgttgt---gtttacggagattgattttg 28625856  T
Q  523 ccatccaaaaaggtctagcggcgcag 548  Q
    |||| ||||||| |||||||||||||    
T  28625855 ccattcaaaaagatctagcggcgcag 28625830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 431 - 544
Target Start/End: Original strand, 357810 - 357920
Alignment:
Q  431 tgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaa 530  Q
    |||||||||||||||||| |||| | | | |||||||||||| || |||||||||||||||||   ||||||||| |||| ||||  |||||||||| ||    
T  357810 tgaccttctacatagagtccaaatgattaagcatagcaatgttatctctcctaggtccatgaa---tgttgtgtttacgaagattaattttgccatctaa 357906  T
Q  531 aaaggtctagcggc 544  Q
    ||| || |||||||    
T  357907 aaatgtatagcggc 357920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 467 - 564
Target Start/End: Complemental strand, 34168897 - 34168804
Alignment:
Q  467 caatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||| ||||||| ||||||||||||||   ||| ||||||||| ||||||| ||||||||||| |||||||||||  |||| ||||||||||    
T  34168897 caatgtcatgactcctagatccatgaatgttgt---gtt-acgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgc 34168804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 562
Target Start/End: Original strand, 34554370 - 34554498
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatcca 529  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||||||| || || ||||||   | ||||||| |||||||||  ||||| ||||||    
T  34554370 ttgactttctacatagagtttaaaaggtcatgtatagcaatatcatgtctcgtaagt-catgaa---ttttgtgtttacgaggattgattttgtcatcca 34554465  T
Q  530 aaaaggtctagcggcgcagtttgttgcccgctt 562  Q
    |||||| |||| ||| ||| || |||| |||||    
T  34554466 aaaaggcctagtggcacagcttattgctcgctt 34554498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 34415451 - 34415404
Alignment:
Q  429 gttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatg 476  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  34415451 gttgaccttctatatagagttcaaatggtcatgcatagcaatgtcatg 34415404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 499
Target Start/End: Original strand, 28009078 - 28009149
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||||  ||| |||||||| |||||| || | |||||||||| |||||||||||||||| |||||    
T  28009078 tgttgaccttctgtatatagttcaaagggtcatacacaacaatgtcatgactcctaggtccatgaacgttgt 28009149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 24745601 - 24745569
Alignment:
Q  127 catcatacaatgttcaccacttttggcactcaa 159  Q
    |||||||||||||||||||||||||||||||||    
T  24745601 catcatacaatgttcaccacttttggcactcaa 24745569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 499
Target Start/End: Original strand, 13398273 - 13398344
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||| |||||||||||||||||||| | ||||||| |||||||| | || |||| | ||| ||||||||    
T  13398273 tgttgacattctacatagagttcaaaagatgatgcataacaatgtcacgacttctagatgcataaatgttgt 13398344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 499
Target Start/End: Original strand, 7200627 - 7200697
Alignment:
Q  429 gttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||| |||||| | ||||||  ||||||||||||||  | ||||||||||| || |||||||||||    
T  7200627 gttgaccttttacataaatttcaaagagtcatgcatagcaacattatgtctcctagatcaatgaatgttgt 7200697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 499
Target Start/End: Original strand, 31703561 - 31703631
Alignment:
Q  429 gttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    ||||||||||||||||||||| ||| | ||||||| | |||| ||||||||| | ||| ||||||| ||||    
T  31703561 gttgaccttctacatagagtttaaatgatcatgcacatcaatatcatgtctcattggttcatgaatattgt 31703631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 499
Target Start/End: Complemental strand, 3714931 - 3714862
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||| ||||||||||||||| |||   ||||||| | |||||||||||||| ||  ||||||||||||||    
T  3714931 ttgatcttctacatagagtttaaagaatcatgcacaacaatgtcatgtctcataaatccatgaatgttgt 3714862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 492
Target Start/End: Complemental strand, 22985937 - 22985873
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatga 492  Q
    |||| |||||||| ||||||| ||||||||||| |||||| |||| || |||| ||||| |||||    
T  22985937 tgtttaccttctatatagagtccaaaaggtcatacatagccatgttatatctcttaggttcatga 22985873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 492
Target Start/End: Original strand, 23802457 - 23802521
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatga 492  Q
    |||| |||||||| ||||||| ||||||||||| |||||| |||| || |||| ||||| |||||    
T  23802457 tgtttaccttctatatagagtccaaaaggtcatacatagccatgttatatctcttaggttcatga 23802521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 483
Target Start/End: Complemental strand, 24016342 - 24016298
Alignment:
Q  439 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctccta 483  Q
    ||||||||||||||| ||||||||| |  ||||||||||||||||    
T  24016342 tacatagagttcaaagggtcatgcacaagaatgtcatgtctccta 24016298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 423 - 499
Target Start/End: Complemental strand, 6355 - 6279
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6355 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 6279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 423 - 564
Target Start/End: Complemental strand, 33271 - 33133
Alignment:
Q  423 gaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttg 522  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    || ||||| |||||||||  |||||    
T  33271 gaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaattttatgtctcctaggtccatgaa---cgtcgtgtttacgaggattgattttg 33175  T
Q  523 ccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
     ||||||||||||  | |||| |||| |||||||| ||||||    
T  33174 tcatccaaaaaggcttggcggtgcagcttgttgcctgcttgc 33133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 428 - 535
Target Start/End: Original strand, 275 - 379
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||| || |||||    |||||||| ||||||||| |||||||||||    
T  275 tgttgaccttctgcataaagttcaaaaagtcatacatagcaatgtcatgtctcctagatcgatgaa---cgttgtgtttacgaggattagttttgccatc 371  T
Q  528 caaaaagg 535  Q
    ||||||||    
T  372 caaaaagg 379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 497 - 564
Target Start/End: Complemental strand, 5274 - 5207
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||    
T  5274 tgttgtgttcacgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgc 5207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 428 - 554
Target Start/End: Complemental strand, 7618 - 7496
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatc 527  Q
    |||||||||| | ||||| |||||||||||||||||||  ||||||||||||| ||||||||||||   |||| |||| ||||| ||| |||||| ||||    
T  7618 tgttgaccttttgcatagcgttcaaaaggtcatgcatat-aatgtcatgtctcataggtccatgaa---tgttatgtttacgagtattggttttgtcatc 7523  T
Q  528 caaaaaggtctagcggcgcagtttgtt 554  Q
    ||||||| |||| |||| ||| |||||    
T  7522 caaaaagatctaacggcacagcttgtt 7496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 6837 - 6771
Alignment:
Q  498 gttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgc 564  Q
    |||||||| ||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  6837 gttgtgtttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgc 6771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 440 - 556
Target Start/End: Complemental strand, 49419 - 49306
Alignment:
Q  440 acatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgttgtgttcacgaggatttgttttgccatccaaaaaggtcta 539  Q
    |||||||||||||| | ||||||||| |||||||||||||| || |||||||||||| ||    || ||||| |||  |||| ||||| |||| ||||||    
T  49419 acatagagttcaaaggatcatgcataacaatgtcatgtctcttatgtccatgaatgtagta---tttacgagaattgatttttccatctaaaacggtcta 49323  T
Q  540 gcggcgcagtttgttgc 556  Q
    ||||||||  |||||||    
T  49322 gcggcgcaacttgttgc 49306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 497 - 558
Target Start/End: Original strand, 16811 - 16872
Alignment:
Q  497 tgttgtgttcacgaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgccc 558  Q
    |||||| |||||||| |||  |||||||||||||||||||||||||| ||||  ||||||||    
T  16811 tgttgtattcacgagaattgattttgccatccaaaaaggtctagcggtgcagcatgttgccc 16872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 16120 - 16068
Alignment:
Q  430 ttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcct 482  Q
    ||||| |||||||||||||||||| |||||||||||| ||| |||||| ||||    
T  16120 ttgactttctacatagagttcaaagggtcatgcatagtaatatcatgtttcct 16068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 18455 - 18499
Alignment:
Q  428 tgttgaccttctacatagagttcaaaaggtcatgcatagcaatgt 472  Q
    |||| ||||||||||||||||| ||| ||||||||| ||||||||    
T  18455 tgttaaccttctacatagagtttaaagggtcatgcagagcaatgt 18499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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