View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12719_high_4 (Length: 378)

Name: NF12719_high_4
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12719_high_4
NF12719_high_4
[»] chr7 (1 HSPs)
chr7 (15-361)||(2311175-2311521)
[»] chr4 (10 HSPs)
chr4 (224-348)||(30271223-30271347)
chr4 (224-348)||(30280842-30280966)
chr4 (224-348)||(30304290-30304414)
chr4 (221-328)||(30264349-30264456)
chr4 (221-328)||(30287732-30287839)
chr4 (216-330)||(30032299-30032413)
chr4 (224-330)||(30220274-30220380)
chr4 (216-330)||(30048545-30048659)
chr4 (216-330)||(30062886-30063000)
chr4 (216-330)||(30228684-30228798)
[»] scaffold0024 (2 HSPs)
scaffold0024 (225-315)||(79534-79624)
scaffold0024 (225-279)||(72506-72560)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 2311175 - 2311521
Alignment:
Q  15 atgaagataaaagatggaagcaagttgatgtgaacttaaaagaccatgtgaaaaaaccaatatttgcaaaaggnnnnnnngtggaattctatgagaaatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||| |||||    
T  2311175 atgaagataaaagatggaagcaagttgatgtgaacttaaaagaccatgtgaaaaaaccaatattttcaaaaggaaaaaaagtggaattctatgacaaatc 2311274  T
Q  115 ttttcaagattatttgtcaaccatagcaattgagccattacctcaagggaaaccattatgggaagttcacatagtaaactaccctacaaaaaattcatta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311275 ttttcaagattatttgtcaaccatagcaattgagccattacctcaagggaaaccattatgggaagttcacatagtaaactaccctacaaaaaattcatta 2311374  T
Q  215 ggcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311375 ggcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttc 2311474  T
Q  315 ctttgtcttttccttctcttaaaccatcaaaattagaaccttataat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2311475 ctttgtcttttccttctcttaaaccatcaaaattagaaccttataat 2311521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 348
Target Start/End: Complemental strand, 30271347 - 30271223
Alignment:
Q  224 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 323  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | |||||||| || ||||||||||||||||    
T  30271347 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtctt 30271248  T
Q  324 ttccttctcttaaaccatcaaaatt 348  Q
    ||||||| |  ||||||||| ||||    
T  30271247 ttccttcacgcaaaccatcacaatt 30271223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 348
Target Start/End: Original strand, 30280842 - 30280966
Alignment:
Q  224 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 323  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | |||||||| || ||||||||||||||||    
T  30280842 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtctt 30280941  T
Q  324 ttccttctcttaaaccatcaaaatt 348  Q
    ||||||| |  ||||||||| ||||    
T  30280942 ttccttcacgcaaaccatcacaatt 30280966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 224 - 348
Target Start/End: Complemental strand, 30304414 - 30304290
Alignment:
Q  224 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 323  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||| | | |||||| || ||||||||||||||||    
T  30304414 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagttgatgacccttctcttcctttgtctt 30304315  T
Q  324 ttccttctcttaaaccatcaaaatt 348  Q
    ||||||| |  ||||||||| ||||    
T  30304314 ttccttcacgcaaaccatcacaatt 30304290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 30264456 - 30264349
Alignment:
Q  221 ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgt 320  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||    
T  30264456 ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt 30264357  T
Q  321 cttttcct 328  Q
    ||||||||    
T  30264356 cttttcct 30264349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 221 - 328
Target Start/End: Original strand, 30287732 - 30287839
Alignment:
Q  221 ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgt 320  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||    
T  30287732 ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgt 30287831  T
Q  321 cttttcct 328  Q
    ||||||||    
T  30287832 cttttcct 30287839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 30032413 - 30032299
Alignment:
Q  216 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 315  Q
    |||| ||||||||||||||||| ||||||||||| || ||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30032413 gcaccataatattcaaacttcatcatgcacttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30032314  T
Q  316 tttgtcttttccttc 330  Q
    ||| |||||||||||    
T  30032313 tttatcttttccttc 30032299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 30220274 - 30220380
Alignment:
Q  224 atattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtctt 323  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||| | ||||    
T  30220274 atattcaaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatctt 30220373  T
Q  324 ttccttc 330  Q
    |||||||    
T  30220374 ttccttc 30220380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 30048659 - 30048545
Alignment:
Q  216 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 315  Q
    |||| ||||||||||||||||| |||| |||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30048659 gcaccataatattcaaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30048560  T
Q  316 tttgtcttttccttc 330  Q
    | | |||||||||||    
T  30048559 tctatcttttccttc 30048545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 30063000 - 30062886
Alignment:
Q  216 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 315  Q
    |||| ||||||||||||||||| |||| |||||| |||||||| ||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30063000 gcaccataatattcaaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30062901  T
Q  316 tttgtcttttccttc 330  Q
    | | |||||||||||    
T  30062900 tctatcttttccttc 30062886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 30228798 - 30228684
Alignment:
Q  216 gcacaataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 315  Q
    |||| ||||||||||||||| | ||||||||||| |||||||| ||||| ||| |||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  30228798 gcaccataatattcaaacttaatcatgcacttggtgatggttactctctcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcc 30228699  T
Q  316 tttgtcttttccttc 330  Q
    | | |||||||||||    
T  30228698 tctatcttttccttc 30228684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 79624 - 79534
Alignment:
Q  225 tattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcc 315  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| || || | |||||| | || ||||||||    
T  79624 tattcaaacttcatcatgcacttggagatggttactctctaatgggtgcacttctttcatgtttagaaagagctgataacccttctcttcc 79534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 72560 - 72506
Alignment:
Q  225 tattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttct 279  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| || |||||    
T  72560 tattcaaacttcatcatgcacttggagatggttactctctaatgggagctcttct 72506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University