View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12719_high_5 (Length: 367)
Name: NF12719_high_5
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 811483 - 811127
Alignment:
| Q |
13 |
atatcaaaatattttatgtacattattacaagcttcttctcagttatgttttgttcttcattttcatgatggcaaagaaggtgaatgtgattccactagt |
112 |
Q |
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| T |
811483 |
atatcaaaatattttatgtacattattacaagcctcttctcagttatgttttgttcttcattttcatgatggcaaaggaggtgaatgtgattccactagt |
811384 |
T |
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| Q |
113 |
atcgaccagaggacttgcacatcttcataggggcaagatttgacatcttcatacagaatgtatatccctcttcctgcaac--nnnnnnnnnttggcatga |
210 |
Q |
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| T |
811383 |
atcgaccagaggacttgcacatcttcgtaggggcaagatttgacatcttcatacagaatgtatatccctcttcctgcaacaacaaaaaaaattggcatga |
811284 |
T |
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| Q |
211 |
ttagtgtataaatttgcataatgttacttctgtatctatgaaatttcattgaagtgaaggtgaaggatggaactgtatagtttgtgattgannnnnnnnn |
310 |
Q |
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| T |
811283 |
gtagtgtataaatttgcataatgttacttctgtttctatgaaatttcattgaagtgaaggtgaaggatggaactgtatagtttgtgattgattttttttt |
811184 |
T |
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| Q |
311 |
caaggataaaaagctttgtacaacatactaagaacaatgaaaaagaggacacatgca |
367 |
Q |
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| T |
811183 |
caaggataaaaagctttgtacaacatactaagaacaatgaaaaagaggacacatgca |
811127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 47067034 - 47067141
Alignment:
| Q |
81 |
atggcaaagaaggtgaatgtgattccactagtatcgaccagaggacttgcacatcttcataggggcaagatttgacatcttcatacagaatgtatatccc |
180 |
Q |
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| T |
47067034 |
atggcaaagaaggtgaatgtgattccactagtatggaccagaggacgtgcacatcttcataggggcaagatttgacatcttcatatagaatgtaaagccc |
47067133 |
T |
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| Q |
181 |
tcttcctg |
188 |
Q |
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| T |
47067134 |
tcttcctg |
47067141 |
T |
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