View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12719_low_1 (Length: 661)
Name: NF12719_low_1
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 9631707 - 9631252
Alignment:
| Q |
20 |
tgtaggaattaaaatataatgatttaatgaaattggtgattttaatacaaatatttccatacattttataaaatatgtctaattggtagagaatttgtac |
119 |
Q |
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| T |
9631707 |
tgtaggaattaaaatataatgatttaatgaaattggtgattttaatacaaatatttccatacattttataaaatatgtctaattggtagagaatttgtac |
9631608 |
T |
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| Q |
120 |
ggtttttattttcatttgaaatcatgaagtcatgttcatatatgatagcattagtgattttacacgaacacatcaccttaattaggcaaccaattaattt |
219 |
Q |
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| T |
9631607 |
ggtttttattttcatttgaaatcatgaagtcatgttcatat---atagcattagtgattttacacgaacatatcaccttaattaggcaaccaattaattt |
9631511 |
T |
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| Q |
220 |
catacaaaaatagctggttttttacaacatgacacatgacaacattaatatgaaat--gagagagagagatattgaaaagcaatttgtcnnnnnnnnnnn |
317 |
Q |
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| T |
9631510 |
catacaaaaatagcaggttttttacaacatgacacatgacaacattaatatgaaatgagagagagagagatattgaaaagcaatttgtcaaaaaaaaaaa |
9631411 |
T |
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| Q |
318 |
taa-----atattgaaaagcaataagtttttcccattnnnnnnnttatgtaagatgctatgcataaaaataaatatggatcgaaattagagatcgacaag |
412 |
Q |
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| T |
9631410 |
aaaaaaagatattgaaaagcaataagtttttcccattaaaaaaattatgtaagatgctatgcataaaaataaatatggat-gagattagagatcgacaag |
9631312 |
T |
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| Q |
413 |
ttgacttgac-nnnnnnnnnngattgacaagaatgacaatgatgtacgtagtgtaactttc |
472 |
Q |
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| T |
9631311 |
ttgacttgacaaaaaaagaaagattgacaagaatg-caatgatgtacgtagtgtaactttc |
9631252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 540 - 634
Target Start/End: Complemental strand, 9631111 - 9631017
Alignment:
| Q |
540 |
gtattgatgagtggtaccatttatgaatttattttgctttaaatacgattactatgtaccaaaacaaaatcacattaacacgataattattcatt |
634 |
Q |
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| T |
9631111 |
gtattgatgggtggtaccatttatgaaattattttgctttatatacgattactatgtaccaaaacaaaatcacattaacacgataattattcatt |
9631017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 83 - 277
Target Start/End: Complemental strand, 9643920 - 9643727
Alignment:
| Q |
83 |
ttttataaaatatgtctaattggtagagaatttgtacggtttttattttcatttgaaatcatgaagtcatgttcatatatgatagcattagtgattttac |
182 |
Q |
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| T |
9643920 |
ttttataaaatatgtatagttggtagagaatctgtaca-tttttattttcattttcgatcatgaagacatagacatatatgatatcattagtgattttac |
9643822 |
T |
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| Q |
183 |
acgaacacatcaccttaattaggcaaccaattaatttcatacaaaaatagctggttttttacaacatgacacatgacaacattaatatgaaatga |
277 |
Q |
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| T |
9643821 |
atgaacacgtcaacttaattacgcaaccatttaattccatacaaaaatagtagttttactacaacatatcacatgcaagcattaatatgaaatga |
9643727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 9644738 - 9644585
Alignment:
| Q |
122 |
tttttattttcatttgaaatcat----gaagtcatgttcatatatgatagcat--tagtgattttacacgaacacatcaccttaattaggcaaccaatta |
215 |
Q |
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| T |
9644738 |
tttttattttcatttgaaatcaatctcgaagacatatacatgtatgatagcatattagtgattttacaagaacacatcaccttaattaggccaccattta |
9644639 |
T |
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| Q |
216 |
atttcatacaaaaatagctggttttttacaacatgacacatgacaacattaatatgaaat |
275 |
Q |
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| T |
9644638 |
atttcatacaaaa------gatttcttataacatgacacatgacaacattaaaatgaaat |
9644585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 469 - 544
Target Start/End: Complemental strand, 9631215 - 9631140
Alignment:
| Q |
469 |
tttccttaagaaacgttgataaacaaatatgtacagttcctctgcnnnnnnnttaaacaaaaatgtacaccgtatt |
544 |
Q |
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| T |
9631215 |
tttcctaaaggaacgttgataaacaaatatgtacagttcctctgcaaaaaaattaaacaaaaatgtacaccgtatt |
9631140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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