View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12719_low_14 (Length: 258)
Name: NF12719_low_14
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 3032216 - 3032450
Alignment:
| Q |
19 |
cacagagatctttccaattgtttctttgcagattttgaattgctatataggtgaaatatgtaaaagcaagactggaccggagatcgaaactgtgagacca |
118 |
Q |
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| T |
3032216 |
cacagagatctttccaattgtttctttgcagattttgaattgctatataggtgaaatatgtaaaagcaagactggaccggagatcgaaactgtgagacca |
3032315 |
T |
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| Q |
119 |
atcatggttcacttgattcgatcacttcaactgattgaaccaaccaaatttaaccgtctcgttgaactagttaagtcaaattaccttgtaacccaaatca |
218 |
Q |
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| T |
3032316 |
atcatggttcacttgattcgatcacttcaactgattgaaccaaccaaatttaaccgactcgttgaactagttcagtcaaattaccttgtaacccaaatca |
3032415 |
T |
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| Q |
219 |
gacctaccgacaaattggctggtaccctattcaac |
253 |
Q |
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| T |
3032416 |
gacctaccgacaaattggctggtaccctattcaac |
3032450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 20061428 - 20061292
Alignment:
| Q |
118 |
aatcatggttcacttgattcgatcacttcaactgattgaaccaaccaaatttaaccgtctcgttgaactagttaagtcaaattaccttgtaacccaaatc |
217 |
Q |
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| T |
20061428 |
aatcatggttcaattgattcaatcgtttcaactgattgaaccaacttaatttaaccgtcttgttgaactagttcaatcaaattacattgtaacccaaatc |
20061329 |
T |
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| Q |
218 |
agacctaccgacaaattggctggtaccctattcaacg |
254 |
Q |
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| T |
20061328 |
agacctaccagcaaattggccagtaccctattcaacg |
20061292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 20061594 - 20061536
Alignment:
| Q |
28 |
ctttccaattgtttctttgca-gattttgaattgctatataggtgaaatatgtaaaagc |
85 |
Q |
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|||| ||||| ||| |||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
20061594 |
cttttcaattatttttttgcatgattttgaattgctatataggtgaaatatgtataagc |
20061536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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