View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12719_low_15 (Length: 252)
Name: NF12719_low_15
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 42313131 - 42313375
Alignment:
| Q |
1 |
gctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatgaataccacaagtgagcatcttctgtaagctctgca |
100 |
Q |
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| T |
42313131 |
gctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatgaataccagaagtgagcatcttctgtaagctctgca |
42313230 |
T |
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| Q |
101 |
agagatcaaagacatttcatgttaagagcataatccaattccaaacaacacatgctacaattcagatagtggcctagaaatttggagacatgtataaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313231 |
agagatcaaagacatttcatgttaagagcataatccaattccaaacaacacatgctacaattcagatagtggcctagaaatttggagacatgtataaatt |
42313330 |
T |
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| Q |
201 |
ttaatttaaaactaagaatggaaatacaatcaatcacctatgcta |
245 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
42313331 |
ttaatttaaaactacgaatggaaatacaatcaatcacctgtgcta |
42313375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 47977747 - 47977846
Alignment:
| Q |
1 |
gctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatgaataccacaagtgagcatcttctgtaagctctgca |
100 |
Q |
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| T |
47977747 |
gctatattcggtgaggaaaagtcaaccataaccctcttgattggaagtcgaggtgcccatgaatcaataccatcggtaagcatcttctgtaagctctgca |
47977846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 51565105 - 51565006
Alignment:
| Q |
1 |
gctatattaggcgaggaaaagtcaaccagaatcctcttgacaggaagtcgaggagcccatgaatgaataccacaagtgagcatcttctgtaagctctgca |
100 |
Q |
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|||||||| || |||||||||||||||| || |||||||| ||||||||||| |||||||||| ||||||| || |||||| ||||||||||||||| |
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| T |
51565105 |
gctatattgggtgaggaaaagtcaaccataaccctcttgattggaagtcgaggtgcccatgaatcaataccatcggtaagcatcctctgtaagctctgca |
51565006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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