View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12719_low_18 (Length: 232)
Name: NF12719_low_18
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 2638427 - 2638252
Alignment:
| Q |
53 |
attacttttaattgatgcttctttttctttttatat--gcattctaaacttaggttactatgcatttttt-agttataccattcaattcaaagaatgaat |
149 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
2638427 |
attacttttaattgatgcttctttttctttttatatatgccctctaaacttaggttactatgtttttttttagttataccattcaattcaaagaatgaac |
2638328 |
T |
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| Q |
150 |
gtggacttaatttggctagttcgtccattgttttggttaatttgaatctctttgttcatcgatttgtcctttgctt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2638327 |
gtggacttaatttggctagttcgtccattgttttggttaatttgaatctctttgttcatcgatctgtcctttgctt |
2638252 |
T |
|
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6944234 - 6944180
Alignment:
| Q |
1 |
aacattcttcaaggatcctctcattcattatgttagatatcaaggaaaatgcatt |
55 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6944234 |
aacattcttcaaggatcctctcattcattatgttagatatcaaggaaaatacatt |
6944180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 39182843 - 39182790
Alignment:
| Q |
1 |
aacattcttcaaggatcctctcattcattatgttagatatcaaggaaaatgcat |
54 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39182843 |
aacattcctcaaggatcctctcattcattatgttagatatcaaggaaaatgcat |
39182790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18302856 - 18302910
Alignment:
| Q |
1 |
aacattcttcaaggatcctctcattcattatgttagatatcaaggaaaatgcatt |
55 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
18302856 |
aacattcttcaaggatcctctcattcattatgttagatatcaaggaaaatacatt |
18302910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13235022 - 13235076
Alignment:
| Q |
1 |
aacattcttcaaggatcctctcattcattatgttagatatcaaggaaaatgcatt |
55 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
13235022 |
aacattcttcaaggatcctctcattcattatgttagatatcaaggaaaatacatt |
13235076 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42913457 - 42913511
Alignment:
| Q |
1 |
aacattcttcaaggatcctctcattcattatgttagatatcaaggaaaatgcatt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || |||||||||||||||| |
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|
| T |
42913457 |
aacattcttcaaggatcctctcattcattatgtgaaatgtcaaggaaaatgcatt |
42913511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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