View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12719_low_19 (Length: 225)

Name: NF12719_low_19
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12719_low_19
NF12719_low_19
[»] chr8 (3 HSPs)
chr8 (16-220)||(41528414-41528620)
chr8 (16-208)||(36754454-36754647)
chr8 (113-171)||(43216917-43216975)
[»] scaffold0284 (1 HSPs)
scaffold0284 (18-208)||(2254-2445)
[»] scaffold0114 (1 HSPs)
scaffold0114 (16-201)||(35117-35303)
[»] chr4 (6 HSPs)
chr4 (16-220)||(6552613-6552819)
chr4 (16-220)||(6553013-6553219)
chr4 (16-220)||(312787-313003)
chr4 (113-179)||(24181727-24181793)
chr4 (23-80)||(7616761-7616818)
chr4 (90-142)||(6561023-6561075)
[»] chr1 (6 HSPs)
chr1 (16-220)||(45919624-45919830)
chr1 (16-220)||(49880255-49880463)
chr1 (99-179)||(16853665-16853745)
chr1 (23-80)||(40872561-40872618)
chr1 (90-171)||(31088746-31088829)
chr1 (19-59)||(9890557-9890597)
[»] chr5 (1 HSPs)
chr5 (16-202)||(9023444-9023631)
[»] chr2 (7 HSPs)
chr2 (16-208)||(31967255-31967448)
chr2 (19-83)||(23077825-23077889)
chr2 (92-131)||(36727631-36727670)
chr2 (16-83)||(41746339-41746406)
chr2 (17-83)||(9470623-9470689)
chr2 (105-145)||(36720129-36720169)
chr2 (95-179)||(45054025-45054109)
[»] scaffold0211 (1 HSPs)
scaffold0211 (16-220)||(19858-20064)
[»] chr3 (6 HSPs)
chr3 (39-202)||(50239968-50240135)
chr3 (16-83)||(7672541-7672608)
chr3 (11-77)||(43838652-43838718)
chr3 (113-180)||(14249223-14249290)
chr3 (113-179)||(6437626-6437692)
chr3 (16-57)||(30006165-30006206)
[»] chr6 (5 HSPs)
chr6 (19-83)||(6525049-6525113)
chr6 (100-179)||(18089942-18090021)
chr6 (16-82)||(21237365-21237431)
chr6 (98-179)||(26595897-26595978)
chr6 (90-178)||(31737166-31737254)
[»] scaffold0191 (1 HSPs)
scaffold0191 (113-179)||(11645-11711)
[»] scaffold0216 (1 HSPs)
scaffold0216 (90-142)||(29157-29209)
[»] scaffold0074 (1 HSPs)
scaffold0074 (92-179)||(32751-32837)
[»] scaffold0252 (1 HSPs)
scaffold0252 (19-83)||(17103-17166)
[»] chr7 (4 HSPs)
chr7 (92-146)||(2929478-2929532)
chr7 (113-179)||(6190585-6190651)
chr7 (23-83)||(8929667-8929727)
chr7 (90-178)||(29912628-29912716)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 41528620 - 41528414
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaa 114  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41528620 cagagacaatttaaaattttaatacattgatgtactattttagcctcacatgtatccaatgtctagatatgtccctggatgcaaaagtaaatgttaagaa 41528521  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||     
T  41528520 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataacatgatgatccaa 41528421  T
Q  214 ctcattg 220  Q
    |||||||    
T  41528420 ctcattg 41528414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 36754647 - 36754454
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaa 114  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  36754647 cagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctatccctggatgcaaaagtaaatgttaagaa 36754548  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |||||    
T  36754547 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatctgctgtcaatagtatgattaaccttaacataatgtgatg 36754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 43216975 - 43216917
Alignment:
Q  113 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 171  Q
    ||||||||||||||||||||| |||||| |||| |  ||||||||||| ||||||||||    
T  43216975 aaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgtg 43216917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 2445 - 2254
Alignment:
Q  18 gagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaaac 116  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2445 gagacaatttaaaattttaatagattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaac 2346  T
Q  117 atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2345 atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 2254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 35117 - 35303
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35117 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa 35216  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataa 201  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  35217 acatataagttagatgatcgatatacctaatacactaagattttggatgatgttgtgctgtcaattgtatgattaaccttaacataa 35303  T

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Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 6552613 - 6552819
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaa 114  Q
    |||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  6552613 cagagacaatttaaatctttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaaaaa 6552712  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 213  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||     
T  6552713 acgtataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaa 6552812  T
Q  214 ctcattg 220  Q
    |||||||    
T  6552813 ctcattg 6552819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 6553013 - 6553219
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  6553013 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctagatgcaaaagtaaatgttaagaa 6553112  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 213  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| ||||     
T  6553113 acatataagtgagatgatcgatatacctaatagactaagattttggatgatggtgtgctgtcaattgtatgattaaccttaacataatgtgatgatccaa 6553212  T
Q  214 ctcattg 220  Q
    |||||||    
T  6553213 ctcattg 6553219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 312787 - 313003
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-----------tgtccctggatgcaaaagtaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||           ||||  |||||||||||||||    
T  312787 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctcgatctgtctcgatctgtctgtggatgcaaaagtaa 312886  T
Q  105 atgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  312887 atgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgt 312986  T
Q  205 gatg-tccatctcattg 220  Q
    |||| |||| |||||||    
T  312987 gatgatccaactcattg 313003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 24181793 - 24181727
Alignment:
Q  113 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||| ||||||| || |||||||    
T  24181793 aaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgtcaat 24181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 7616818 - 7616761
Alignment:
Q  23 aatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtcta 80  Q
    ||||||||||||||||||| |||   |||||||||||| ||||| |||| ||||||||    
T  7616818 aatttaaaattttaatacactgaaaaactattttagctccacatatatcaaatgtcta 7616761  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 6561023 - 6561075
Alignment:
Q  90 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 142  Q
    ||||| |||||||| |||||||  |||||||||||||||||| | ||||||||    
T  6561023 tggatacaaaagtagatgttaaacaacatataagtgagatgaccaatatacct 6561075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 45919830 - 45919624
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  45919830 cagagacaatttaaaattttaatacattggtggactattttagtctcacatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaa 45919731  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 213  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||     
T  45919730 atatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaa 45919631  T
Q  214 ctcattg 220  Q
    |||||||    
T  45919630 ctcattg 45919624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 49880255 - 49880463
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 114  Q
    ||||||||||||||||||| ||||||||| |||||||||||||  || ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  49880255 cagagacaatttaaaatttaaatacattggtggactattttagtctcgcatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaa 49880354  T
Q  115 acatataagtgagatgatc--gatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tcc 211  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  49880355 acatataagtgagatgataaagatatacctaatacactaagattttgattgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatcc 49880454  T
Q  212 atctcattg 220  Q
    | |||||||    
T  49880455 aactcattg 49880463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 16853665 - 16853745
Alignment:
Q  99 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    |||||||| || | ||||||||||||||||||||| |||||| |||| |  |||| |||||| |||||||||| |||||||    
T  16853665 aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaat 16853745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 40872618 - 40872561
Alignment:
Q  23 aatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtcta 80  Q
    ||||||||||||| ||||||| | ||||||||||||| |||||| |||| ||||||||    
T  40872618 aatttaaaattttgatacattaagggactattttagcctcacatatatcaaatgtcta 40872561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 31088829 - 31088746
Alignment:
Q  90 tggatgcaaaagtaaatgttaagaaacatata--agtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 171  Q
    ||||||||| ||||  |||| |||||||||||  |||||||||||| ||||||||||| |  ||| ||||||||||||| ||||    
T  31088829 tggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaatattttggatgatggtgtg 31088746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 9890597 - 9890557
Alignment:
Q  19 agacaatttaaaattttaatacattgatggactattttagc 59  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  9890597 agacaatttaaaattttaatacattgaaagaccattttagc 9890557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 9023444 - 9023631
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 114  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9023444 cagagacaatttaaaattttaatacattgatagactatcttagcctcacatgtatccaatgtctatatttgtccctggatgcaaaagtaaatgttaagaa 9023543  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 202  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023544 acatacaagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 9023631  T

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Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 31967448 - 31967255
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 114  Q
    ||||||||| ||||| |||| ||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31967448 cagagacaacttaaattttttataaattgatggactactttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa 31967349  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  31967348 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 31967255  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 23077889 - 23077825
Alignment:
Q  19 agacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 83  Q
    |||||| |||||||||| ||||||||| | |||||||||||  ||||||||||| ||||||||||    
T  23077889 agacaacttaaaattttgatacattgaggaactattttagccccacatgtatccgatgtctagat 23077825  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 36727670 - 36727631
Alignment:
Q  92 gatgcaaaagtaaatgttaagaaacatataagtgagatga 131  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  36727670 gatgcaaaagtagatgttaagaaacatatatgtgagatga 36727631  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 41746406 - 41746339
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 83  Q
    |||||||||||||||||||| ||| ||| | || ||||||||||  ||||| |||| |||||||||||    
T  41746406 cagagacaatttaaaattttgatatattaagggtctattttagccccacatatatcaaatgtctagat 41746339  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 9470689 - 9470623
Alignment:
Q  17 agagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 83  Q
    ||||||||||||||||||| ||| ||| |  |||||||||| |  |||||||||| |||||||||||    
T  9470689 agagacaatttaaaattttgatatatttagtgactattttaaccccacatgtatcaaatgtctagat 9470623  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 36720129 - 36720169
Alignment:
Q  105 atgttaagaaacatataagtgagatgatcgatatacctaat 145  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  36720129 atgttgagcaacatataagtgagatgatccatatacctaat 36720169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 45054109 - 45054025
Alignment:
Q  95 gcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    |||||||||||| || || ||||||||||||||||  || |||||||| ||    |||||||||| |||| |||||| |||||||    
T  45054109 gcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtcttaagattttgaatgaagatgtggtgtcaat 45054025  T

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Target: scaffold0211 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 20064 - 19858
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 114  Q
    |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  20064 cagagacaatttaaaattttaatacattgatggactatcttaacctcacatgtatccaatgtctagatttgtccctgaatgcaaaagtaaatgttaagaa 19965  T
Q  115 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||| ||||| ||||     
T  19964 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgccaattgtattattaaccataacataatgtgatgatccaa 19865  T
Q  214 ctcattg 220  Q
    |||||||    
T  19864 ctcattg 19858  T

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Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 50239968 - 50240135
Alignment:
Q  39 acattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaa---gaaacatataagtgagatgatcg 134  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||   |||||||||||||||||||||||    
T  50239968 acattgatggactattttagcctcacatgtagccaatgtctagatctgtccctcgatgcaaaagtaaatgttaattagaaacatataagtgagatgatcg 50240067  T
Q  135 atatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50240068 atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataat 50240135  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 7672541 - 7672608
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 83  Q
    |||||||||||||||||||||||||||||||| ||||||||| |   ||||||||| ||| |||||||    
T  7672541 cagagacaatttaaaattttaatacattgatgaactattttaaccatacatgtatcaaatatctagat 7672608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 43838652 - 43838718
Alignment:
Q  11 agaagcagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgt 77  Q
    |||| |||||||||| ||||||||| ||||||||| | |||||||||||  |||||||||| |||||    
T  43838652 agaatcagagacaatgtaaaattttgatacattgaggaactattttagccccacatgtatcaaatgt 43838718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 14249290 - 14249223
Alignment:
Q  113 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaatt 180  Q
    ||||||||||||||||||| | |||||| ||||||  |||| |||||| |||||||||| | ||||||    
T  14249290 aaacatataagtgagatgaccaatatacataatactttaaggttttgggtgatgatgtggtatcaatt 14249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 6437626 - 6437692
Alignment:
Q  113 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||  |||||||||| |||||||    
T  6437626 aaacatataagtgagatgatcaatatacataatgctttaaggttttgagtgatgatgtggtgtcaat 6437692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 30006206 - 30006165
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactatttta 57  Q
    |||||| ||||||||||||||||||||||  |||||||||||    
T  30006206 cagagataatttaaaattttaatacattgtgggactatttta 30006165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 6525049 - 6525113
Alignment:
Q  19 agacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 83  Q
    ||||||||||||||||| ||||||||||||||||||||||   |||||||||| |||||||||||    
T  6525049 agacaatttaaaattttgatacattgatggactattttagtcccacatgtatcaaatgtctagat 6525113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 18090021 - 18089942
Alignment:
Q  100 agtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    |||| ||||| |||||||||||| |||||||| | ||||||||||| |  |||| |||||| ||| |||||| |||||||    
T  18090021 agtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaat 18089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 21237365 - 21237431
Alignment:
Q  16 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctaga 82  Q
    |||||||||||||||||||| |||||||   ||||||||||| |  |||||||||  ||||||||||    
T  21237365 cagagacaatttaaaattttgatacattatgggactattttaaccccacatgtatgaaatgtctaga 21237431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 26595978 - 26595897
Alignment:
Q  98 aaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    |||||| ||||| |||||||||||||| |||||| | ||  |||||||    |||| ||||||||||||||||| |||||||    
T  26595978 aaagtagatgtttagaaacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaat 26595897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 31737254 - 31737166
Alignment:
Q  90 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaa 178  Q
    ||||||||| |||| ||||| |  |||||| |||||| |||||  |||||||||||||| |||||||| |  ||| |||||| ||||||    
T  31737254 tggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagatttagtgtgaagatgtggtgtcaa 31737166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 11645 - 11711
Alignment:
Q  113 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    ||||||||||||||||||||| |||||| ||||||  |||| |||||| |||||||||| |||||||    
T  11645 aaacatataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgtggtgtcaat 11711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  90 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 142  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||    
T  29209 tggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacct 29157  T

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Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 32751 - 32837
Alignment:
Q  92 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    ||||||| || | |||||||||||||||||||||||||||  ||||||||| || |  ||| ||||| |||||||||||| |||||||    
T  32751 gatgcaagagcatatgttaagaaacatataagtgagatgactgatatacctgatgcgttaaaatttt-gatgatgatgtggtgtcaat 32837  T

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Target: scaffold0252 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 17166 - 17103
Alignment:
Q  19 agacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 83  Q
    ||||||||||||||||| |||||||||  ||||||||| ||  |||||||||| |||||||||||    
T  17166 agacaatttaaaattttgatacattgaaagactatttt-gccccacatgtatcaaatgtctagat 17103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 2929478 - 2929532
Alignment:
Q  92 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaata 146  Q
    |||| ||||||| ||||||||||||||||| ||||||||| | | ||||||||||    
T  2929478 gatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaata 2929532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 6190585 - 6190651
Alignment:
Q  113 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 179  Q
    ||||||||||||| ||| ||| |||||| |||| |  ||||||||||| |||||||||| |||||||    
T  6190585 aaacatataagtgggattatcaatatacataatgctttaagattttgggtgatgatgtggtgtcaat 6190651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 8929667 - 8929727
Alignment:
Q  23 aatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 83  Q
    |||||||||||||||||||||||   | |||||||||| || || |||| |||||||||||    
T  8929667 aatttaaaattttaatacattgaaaaattattttagctccatatatatcaaatgtctagat 8929727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 29912628 - 29912716
Alignment:
Q  90 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaa 178  Q
    |||||| || |||| ||||| || ||||||||||||  |||||| |||||||||||    |||||||| || ||| |||||||||||||    
T  29912628 tggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataagatttggggtgaagatgtgttgtcaa 29912716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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