View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12719_low_22 (Length: 212)
Name: NF12719_low_22
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 45472 - 45261
Alignment:
| Q |
1 |
tttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtgagactgaattaaactcctcaacaaagtg |
100 |
Q |
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| T |
45472 |
tttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtgagactgaattaaactcctcaacaaagtg |
45373 |
T |
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| Q |
101 |
ttggcgttatacatttagagtcgccagtatggtcaagaccaacctacttgacccagcctatatgggttaaggccaaaagttaaatctaaaatccaataaa |
200 |
Q |
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| T |
45372 |
ttggctttatacatttagagtcgccagtatggtcaagaccaacctacttgacccagcccatatgggttaaggccagaagttaaatctaaaatccaataaa |
45273 |
T |
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| Q |
201 |
agttgcaaacca |
212 |
Q |
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| T |
45272 |
agttgaaaacca |
45261 |
T |
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Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 21358915 - 21358726
Alignment:
| Q |
1 |
tttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtgagactgaattaaactcctcaacaaagtg |
100 |
Q |
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||||||| ||||||||||||||||| |||||||| || ||| |||||||||||| || |||||| |||| ||| ||| |||||||| ||||||||| |
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| T |
21358915 |
tttctcaaaaattcaaatcaaacataaaaatggattttgatagacatttaggctttgtaaactgcaactgtgatactcaatgaaactccttaacaaagtg |
21358816 |
T |
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| Q |
101 |
ttggcgttatacatttagagtcgccagtatggtcaagaccaacctacttgacccagcctatatgggttaaggccaaaagttaaatctaaaa |
191 |
Q |
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| T |
21358815 |
ttggctttaaacatttagagccatcaatatgatgaagtccaa-ctacttgccccaacccatatgggttaggccaaaaatttaaatctaaaa |
21358726 |
T |
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