View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12719_low_23 (Length: 207)

Name: NF12719_low_23
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12719_low_23
NF12719_low_23
[»] chr4 (10 HSPs)
chr4 (21-193)||(30264358-30264530)
chr4 (21-193)||(30287658-30287830)
chr4 (26-190)||(30048559-30048723)
chr4 (26-190)||(30062900-30063064)
chr4 (21-192)||(30032311-30032482)
chr4 (38-190)||(30228698-30228850)
chr4 (33-190)||(30220209-30220366)
chr4 (21-193)||(30271252-30271424)
chr4 (21-193)||(30280765-30280937)
chr4 (21-193)||(30304319-30304491)
[»] chr7 (2 HSPs)
chr7 (95-193)||(2311381-2311479)
chr7 (101-186)||(29483208-29483293)
[»] scaffold0024 (2 HSPs)
scaffold0024 (44-189)||(79534-79679)
scaffold0024 (47-153)||(72506-72612)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 30264530 - 30264358
Alignment:
Q  21 aaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcact 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264530 aaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcact 30264431  T
Q  121 tggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264430 tggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttg 30264358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 30287658 - 30287830
Alignment:
Q  21 aaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcact 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287658 aaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcact 30287757  T
Q  121 tggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287758 tggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttg 30287830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 30048723 - 30048559
Alignment:
Q  26 acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg 125  Q
    |||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  30048723 acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg 30048624  T
Q  126 atggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcct 190  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30048623 atggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcct 30048559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 30063064 - 30062900
Alignment:
Q  26 acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtg 125  Q
    |||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  30063064 acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg 30062965  T
Q  126 atggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcct 190  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30062964 atggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcct 30062900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 30032482 - 30032311
Alignment:
Q  21 aaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcact 120  Q
    |||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| |||||  |||| ||||||||||||||||||||||||||||||    
T  30032482 aaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcact 30032383  T
Q  121 tggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttccttt 192  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30032382 tggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttccttt 30032311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 38 - 190
Target Start/End: Complemental strand, 30228850 - 30228698
Alignment:
Q  38 aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctc 137  Q
    ||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  30228850 aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatggttactctc 30228751  T
Q  138 tcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcct 190  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  30228750 tcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcct 30228698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 30220209 - 30220366
Alignment:
Q  33 aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggtta 132  Q
    |||| ||||||||||||||||| ||| | || || ||||||||||||||||||      ||  | |||||||||||||| ||||||||||||||||||||    
T  30220209 aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtta 30220308  T
Q  133 ctctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcct 190  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30220309 ctctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcct 30220366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 30271424 - 30271252
Alignment:
Q  21 aaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcact 120  Q
    |||| |||||| |||||||||| ||||||||||||||| | || || ||||||||||| ||||||      ||  | |||||||||||||| ||||||||    
T  30271424 aaagaacaccacaagacaaaccactttgggaaatacatttaattaaatatccaacaagaaatgctaaaggaactttgatattcaaacttcaccatgcact 30271325  T
Q  121 tggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttg 193  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  30271324 tggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttg 30271252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 30280765 - 30280937
Alignment:
Q  21 aaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcact 120  Q
    |||| |||||| |||||||||| ||||||||||| ||| | || || ||||||||||||||||||      ||  | |||||||||||||| ||||||||    
T  30280765 aaagaacaccacaagacaaaccactttgggaaatgcatttaattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcact 30280864  T
Q  121 tggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttg 193  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  30280865 tggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttg 30280937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 30304491 - 30304319
Alignment:
Q  21 aaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcact 120  Q
    |||| |||||| |||||||||| ||||||||||| ||| | || || ||||||||||||||||||      ||  | |||||||||||||| ||||||||    
T  30304491 aaagaacaccacaagacaaaccactttgggaaatgcatttaattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcact 30304392  T
Q  121 tggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttg 193  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||    
T  30304391 tggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagttgatgacccttctcttcctttg 30304319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 2311381 - 2311479
Alignment:
Q  95 ataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttg 193  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| ||||||||||||    
T  2311381 ataatattcaaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttg 2311479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 29483293 - 29483208
Alignment:
Q  101 ttcaaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctct 186  Q
    |||||| |||| |||||| |||| ||||| |||  |||||||||||   |||||||  | ||||| ||||||||||||||||||||    
T  29483293 ttcaaatttcaccatgcaattggagatggctacaatctcatgggtgtcattctttcgagccttcaaagagctgatgatccttctct 29483208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 79679 - 79534
Alignment:
Q  44 ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgg 143  Q
    |||||||| |||||| |||| || ||||||||||  ||||| |||   ||| || ||||||||||||||||||||||||| |||||||||||||| ||||    
T  79679 ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgg 79580  T
Q  144 gtgctcttctttcttgtcttcatagagctgatgatccttctcttcc 189  Q
    |||| |||||||| ||| |  | ||||||||| | |||||||||||    
T  79579 gtgcacttctttcatgtttagaaagagctgataacccttctcttcc 79534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 72612 - 72506
Alignment:
Q  47 tgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggttactctctcatgggtg 146  Q
    |||||||| ||| |||| || ||||||||||  ||||| |||   ||| || ||||||||||||||||||||||||| |||||||||||||| ||||| |    
T  72612 tgggaaattcatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggttactctctaatgggag 72513  T
Q  147 ctcttct 153  Q
    |||||||    
T  72512 ctcttct 72506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University