View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12719_low_24 (Length: 203)
Name: NF12719_low_24
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 3032675 - 3032506
Alignment:
| Q |
18 |
tctacaaggtaaataaattgaaatatttcaaattattgctcaaaatatcattgaagacactaatcttgattgtttctggtttaggtcatctttccagata |
117 |
Q |
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| T |
3032675 |
tctacaaggtaaataaattgaaatatttcaaattattgctcaaaatatcattgaagacactaatcttgattgtttctggttcaggtcatctttccagata |
3032576 |
T |
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| Q |
118 |
atttcttggcagaccagcttaccagccaggtataaaaatttacattacccaaaatcttaatattgttcat |
187 |
Q |
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| T |
3032575 |
atttcttggcagaccagcttaccagccaggtataaaaatttacattacccaaaatcttaatattgttcat |
3032506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 3017831 - 3017737
Alignment:
| Q |
88 |
tgtttctggttt-aggtcatctttccagataatttcttggcagaccagcttaccagccaggtataaaaatttacattacccaaaatcttaatatt |
181 |
Q |
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| T |
3017831 |
tgtttctgttttcaggtcaattttcctgataatttcttggcagatcagcttaccagccaggtttaaaactttacattatactaaattttaatatt |
3017737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 2998910 - 2998837
Alignment:
| Q |
108 |
tttccagataatttcttggcagaccagcttaccagccaggtataaaaatttacattacccaaaatcttaatatt |
181 |
Q |
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| T |
2998910 |
tttcctgatagtttcttggcagatcagcttaccagccaggttttaaactttaaattacactaaattttaatatt |
2998837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 20060884 - 20061020
Alignment:
| Q |
18 |
tctacaaggtaaataaattgaaatatttcaaattattgctcaaaatatcattgaagacactaatcttgattgtttctggtttaggtcatctttccagata |
117 |
Q |
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||||||||||||| ||| ||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20060884 |
tctacaaggtaaacaaagtgaaatatttcaaattaatgcacaaaacatcattgaagatactaatcttgattgtttctggttcaggtcatctttccagata |
20060983 |
T |
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| Q |
118 |
atttcttggcagaccagcttaccagccaggtataaaa |
154 |
Q |
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| T |
20060984 |
atttcttggcagaccagcttaccagccaggtttaaaa |
20061020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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