View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12719_low_7 (Length: 340)
Name: NF12719_low_7
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 329
Target Start/End: Original strand, 18053362 - 18053670
Alignment:
| Q |
21 |
actgagttttcgctcttgcatcaaaaatgcatcttcaatggctcgagtcgctgtaatccttccaaaatcacgttttcgccttcgtctgttcgacaaaatg |
120 |
Q |
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| T |
18053362 |
actgatttttcgctcttgcatcaaaaatgcatcttcaatggctcgagtcgctgaaatccttccaaaatcacgttttcgcattcgtctgttcaacaaaatg |
18053461 |
T |
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| Q |
121 |
tggttttccactgacctaggggtccaatgtaatagacgtgtgtttccctaaattttagggaaagtttggtcagtgacgcgagcctgttgctcgtgatatg |
220 |
Q |
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| T |
18053462 |
tgtttttccacttacctaggggtccaatgtaatagacgtgtgttaacctaaattttagggaaagtttggtcagtgacgcgagcctgttgctcgtgatatg |
18053561 |
T |
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| Q |
221 |
aggtcaacaaaactgaatcccttgtcctgacactcagtatagtcacaatgttgggctcatagcttgcgaagcaaggtagacaatggcaaacaccttgtat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
18053562 |
aggtcaacaaaactgaatcccttgtcctgacactcagtatagtcacaatgttgggctcatagcttgcgaaccaaggtagacaatggcgaacaccttgtat |
18053661 |
T |
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| Q |
321 |
gattttcat |
329 |
Q |
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| T |
18053662 |
gattttcat |
18053670 |
T |
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