View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12719_low_9 (Length: 304)
Name: NF12719_low_9
Description: NF12719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12719_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 30264478 - 30264764
Alignment:
| Q |
1 |
tggatacttgataacatgtatttaacctacgggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaat |
100 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30264478 |
tggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaat |
30264577 |
T |
|
| Q |
101 |
tcaattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264578 |
tcaattgactcatttttagggaacactggaaccttaaaatgatcttttggatttacctctacttttttccatttcatatttccatctttatctctcacct |
30264677 |
T |
|
| Q |
201 |
atatacatggttgcatgcacatgcacatgttaatatttgttatatgatagatatgtaaggaaatataaacactaaaacacataaaaa |
287 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264678 |
atatacatggttgcatgcatatgcacatgttaatatttgttatatgataaatatgtaaggaaatataaacactaaaacacataaaaa |
30264764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 30287710 - 30287424
Alignment:
| Q |
1 |
tggatacttgataacatgtatttaacctacgggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaat |
100 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30287710 |
tggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcttgatcatagaat |
30287611 |
T |
|
| Q |
101 |
tcaattgactcatttttagggaacactggaaccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287610 |
tcaattgactcatttttagggaacactggaaccttaaaatgatcttttggatttacctctacttttttccatttcatatttccatctttatctctcacct |
30287511 |
T |
|
| Q |
201 |
atatacatggttgcatgcacatgcacatgttaatatttgttatatgatagatatgtaaggaaatataaacactaaaacacataaaaa |
287 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287510 |
atatacatggttgcatgcatatgcacatgttaatatttgttatatgataaatatgtaaggaaatataaacactaaaacacataaaaa |
30287424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 30271403 - 30271576
Alignment:
| Q |
32 |
ggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaa |
131 |
Q |
| |
|
|||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |||||||| ||||||||||| ||| |||||||||| | ||||| |
|
|
| T |
30271403 |
ggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaa |
30271502 |
T |
|
| Q |
132 |
ccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
205 |
Q |
| |
|
| | | |||||||| || || |||||||| |||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
30271503 |
cgtgcatatgatcttcaggcttcacctctacctttttccatttcattttgccatctttgtctctcacctatata |
30271576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 30280786 - 30280613
Alignment:
| Q |
32 |
ggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaa |
131 |
Q |
| |
|
|||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |||||||| ||||||||||| ||| |||||||||| | ||||| |
|
|
| T |
30280786 |
ggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaa |
30280687 |
T |
|
| Q |
132 |
ccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
205 |
Q |
| |
|
|||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
30280686 |
ccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata |
30280613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 30304470 - 30304643
Alignment:
| Q |
32 |
ggtttgtcttttggtgtcctttctattaatatctttgacacatagtcatcaaaatcatgatcatagaattcaattgactcatttttagggaacactggaa |
131 |
Q |
| |
|
|||||||||| |||||| ||||| || | |||||||||||||| |||||||||| |||||||| ||||||||||| ||| |||||||||| | ||||| |
|
|
| T |
30304470 |
ggtttgtcttgtggtgttctttccatcataatctttgacacataatcatcaaaatattgatcatacaattcaattgattcacttttagggaatattggaa |
30304569 |
T |
|
| Q |
132 |
ccttaaaatgatcttttggattaacctctacttttttccatttcatatttccatctttatctctcacctatata |
205 |
Q |
| |
|
|||| | |||||||| || || |||||| ||||||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
30304570 |
ccttcatatgatcttcaggcttcgcctctatttttttccacatcattttgccatcttgatctctcacctatata |
30304643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University