View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_high_103 (Length: 300)
Name: NF1271_high_103
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_103 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 43786863 - 43787120
Alignment:
| Q |
30 |
tatgttattaataacactaacccaattcttctcacattcctgtcccaaaagttgttttctctccaattaaaatggccagaatgtaacttgaagattattt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43786863 |
tatgttattaataacactaacccaattcttctcacattcatgtcccaaaagttgttttctctccaattaaaatggccagaatgtaacttgaagattattt |
43786962 |
T |
|
| Q |
130 |
taagtttcattttcaacgatccaccgcagaatcttaatctcttatcataaga---aatattttgttatttcctgatgttatctttattattttatatgcg |
226 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43786963 |
taagtttcattttcaac---tcactgcagaatcttaatctcttattataagaaataatattttgttgtttcctgatgttatctttattattttatatgcg |
43787059 |
T |
|
| Q |
227 |
gtgtgccggtgtctcaataatgcaccttctccttcttcaaaaaataatgcaccttctccct |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43787060 |
gtgtgccggtgtctcaataatgcaccttctccttcttcaaaaaataatgcaccttctccct |
43787120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University