View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_104 (Length: 300)
Name: NF1271_high_104
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_104 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 289
Target Start/End: Original strand, 16193124 - 16193383
Alignment:
| Q |
30 |
aaaacttgttatcaaactgcaagcatattgatatataattgctttaattttgttgatctttcatctaagccacttcaacaaacttcaaatattcctagca |
129 |
Q |
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| T |
16193124 |
aaaacttgttatcaaactgcaaggatattgatacataatggctttaattttgttgatctttcatctaagccacttcaacaaccttcaaatattcctagca |
16193223 |
T |
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| Q |
130 |
ttttgaattgtgatttggaaggtagagagtcacaaacacttgtttgtgatattcatagtgtcctcttaaagactcattctttctttccttatttcatgct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
16193224 |
ttttgaattgtgatttggaaggtagagagtcacaaacacttgtttgtgatattcatagtgtcctcttaaagactcattatttctttccttatttcatgtt |
16193323 |
T |
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| Q |
230 |
agttgcctttgaaggtggtagcattttaagagcttttctattactttgttcatgtcctat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16193324 |
agttgcctttgaaggtggtagcattttaagagcttttctattactttgttcatgtcctat |
16193383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 39977259 - 39977135
Alignment:
| Q |
138 |
tgtgatttggaaggtagagagtcacaaacacttgtttgtgatattcatagtgtcctcttaaagactcattctttctttccttatttcatgctagttgcct |
237 |
Q |
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|||||||| |||||||| |||||||||| |||||||||| |||||||| ||||| |||| | ||||||| || ||||||||||||||||| ||||| | |
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| T |
39977259 |
tgtgatttacaaggtagaatgtcacaaacaattgtttgtgacattcatagagtcctattaaggtctcattcattttttccttatttcatgcttgttgctt |
39977160 |
T |
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| Q |
238 |
ttgaaggtggtagcattttaagagc |
262 |
Q |
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|||||||||| |||||||| ||||| |
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| T |
39977159 |
ttgaaggtggcagcatttttagagc |
39977135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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