View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_112 (Length: 282)

Name: NF1271_high_112
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_112
NF1271_high_112
[»] chr5 (9 HSPs)
chr5 (16-282)||(37315474-37315740)
chr5 (18-282)||(37239018-37239281)
chr5 (216-280)||(37198256-37198320)
chr5 (209-280)||(37203257-37203328)
chr5 (25-102)||(37198453-37198530)
chr5 (216-280)||(37385556-37385620)
chr5 (18-73)||(37385337-37385392)
chr5 (25-102)||(37203436-37203513)
chr5 (216-280)||(37223401-37223465)
[»] chr3 (1 HSPs)
chr3 (191-282)||(36199332-36199423)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 37315740 - 37315474
Alignment:
Q  16 ataggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttctttacctggaatta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37315740 ataggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttctttacctggaatta 37315641  T
Q  116 tgttacgtcattaataattttttgacaatattgtaagatcgcataaaaatattaacattttttactttcttttatacctgtaccatgcaaatattgaccc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37315640 tgttacgtcattaataattttttgacaatattgtaagatcgcataaaaatattaacatttttttctttcttttatacctgtaccatgcaaatattgaccc 37315541  T
Q  216 aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaacc 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37315540 aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaacc 37315474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 37239281 - 37239018
Alignment:
Q  18 aggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttctttacctggaattatg 117  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||| ||||||||| |||||| ||| ||     
T  37239281 aggcacagtgtgttcatgaatgtattctaggcctctggctgaatctagagcaatctgcactctactagaccatggtaatggttctgtacctgaaatcatc 37239182  T
Q  118 tta-cgtcattaataattttttgacaatattgtaagatcgcataaaaatattaacattttttactttcttttatacctgtaccatgcaaatattgaccca 216  Q
    | | | |||||||| | | |||||||||||||||| ||| ||||||||||||| ||  ||||  ||  | |  ||||| ||||||| |||||||||||||    
T  37239181 taaccatcattaatgactgtttgacaatattgtaaaatcacataaaaatattagcacatttttgttaatct--tacctataccatgtaaatattgaccca 37239084  T
Q  217 agtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaacc 282  Q
    |||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  37239083 agtttccattgtcaatatgttcatatacgaggaaaagtgacccttcaacgcaatatccaatcaacc 37239018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 37198320 - 37198256
Alignment:
Q  216 aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa 280  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||| ||||| || ||||| |||||    
T  37198320 aagtttccattatcaatgtattcatagacaaggaaaagggatccctcaacacagtatccgatcaa 37198256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 37203328 - 37203257
Alignment:
Q  209 ttgacccaagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa 280  Q
    ||||| |||||||||||| ||||||| |||||| |||||||| ||  | |||||||| ||||||||||||||    
T  37203328 ttgactcaagtttccattgtcaatgtattcatagacaaggaagagaaaaccttcaacacaatatccaatcaa 37203257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 37198530 - 37198453
Alignment:
Q  25 gtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttct 102  Q
    |||||||| |||||||||||||| ||||| |||||||| ||||||||||  || ||  ||||||||| ||| ||||||    
T  37198530 gtatgttcgtgaatgtattcaagacctctggctgaatccagagcaattttaaccctgatagaccatgacaaaggttct 37198453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 37385556 - 37385620
Alignment:
Q  216 aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa 280  Q
    ||||||||||| || |||| |||||| |||||||| || ||||| ||||| ||||||||||||||    
T  37385556 aagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaa 37385620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 37385337 - 37385392
Alignment:
Q  18 aggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaattt 73  Q
    |||||| | ||| |||||||||||||||||||||||||||  ||| ||||||||||    
T  37385337 aggcactgaatgctcatgaatgtattcaaggcctcttgctacatccagagcaattt 37385392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 37203513 - 37203436
Alignment:
Q  25 gtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaatttccactctactagaccatggcaatggttct 102  Q
    |||||||||||||| |||||||| ||||| |||||||| || ||||||| ||  ||  ||||||||| ||| ||||||    
T  37203513 gtatgttcatgaatatattcaagacctctggctgaatccagcgcaatttgcatccttgtagaccatgacaaaggttct 37203436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 37223465 - 37223401
Alignment:
Q  216 aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa 280  Q
    ||||||||||| || |||| |||||| |||||||| ||  |||| ||||| ||||||||||||||    
T  37223465 aagtttccattttccatgtattcatacacaaggaatagaaatccctcaacacaatatccaatcaa 37223401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 36199423 - 36199332
Alignment:
Q  191 acctgtaccatgcaaatattgacccaagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaacc 282  Q
    ||||| |||| ||||||  |||| ||||||||| || ||||||| |||||| ||||||||||| || |||||||  | ||||||||||||||    
T  36199423 acctgaaccacgcaaatgctgactcaagtttccgttctcaatgtattcatagacaaggaaaagagagccttcaatactatatccaatcaacc 36199332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University