View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_high_115 (Length: 278)
Name: NF1271_high_115
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_115 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 26616853 - 26616618
Alignment:
| Q |
30 |
gaaataaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaatatagtaatagtagaaatgttagtatgctac |
129 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616853 |
gaaattaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaatatagtaatagtagaaatgttagtatgctac |
26616754 |
T |
|
| Q |
130 |
tttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaattacgtaaatcacgatttaatttat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616753 |
tttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaattacgtaaatcacgatttaatttat |
26616654 |
T |
|
| Q |
230 |
gttaatannnnnnnnnatttcaacttttctctcttc |
265 |
Q |
| |
|
||||||| |||||||||||||||||||| |
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|
| T |
26616653 |
gttaatatttttttttatttcaacttttctctcttc |
26616618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 26722781 - 26722546
Alignment:
| Q |
30 |
gaaataaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaatatagtaatagtagaaatgttagtatgctac |
129 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722781 |
gaaattaaaataaatgattgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaatatagtaatagtagaaatgttagtatgctac |
26722682 |
T |
|
| Q |
130 |
tttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaattacgtaaatcacgatttaatttat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26722681 |
tttcttcatcatttgtgtttaaacattaaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaattacgtaaatcacgatttaatttat |
26722582 |
T |
|
| Q |
230 |
gttaatannnnnnnnnatttcaacttttctctcttc |
265 |
Q |
| |
|
||||||| |||||||||||||||||||| |
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|
| T |
26722581 |
gttaatatttttttttatttcaacttttctctcttc |
26722546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 26660848 - 26660723
Alignment:
| Q |
31 |
aaataaaaataaatga--ttgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaata------tagtaatagtagaaatgttagt |
122 |
Q |
| |
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|||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| || | |||| ||||| |||||||| ||||||||||||| |
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| T |
26660848 |
aaataaaaataaatgaagttgttttgtggactccaaaatcagacaaaaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagt |
26660749 |
T |
|
| Q |
123 |
atgctactttcttcatcatttgtgtt |
148 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26660748 |
atgctactttcttcatcatttgtgtt |
26660723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 26766819 - 26766694
Alignment:
| Q |
31 |
aaataaaaataaatga--ttgttctgtgagctccaaaatcagacaagaataggaaagtttaaaagcggaata------tagtaatagtagaaatgttagt |
122 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||| ||||||||| || | |||| ||||| |||||||| ||||||||||||| |
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|
| T |
26766819 |
aaataaaaataaatgaagttgttttgtggactccaaaatcagacaaaaataggaaatttaagaagcagaataatagtatagtaatattagaaatgttagt |
26766720 |
T |
|
| Q |
123 |
atgctactttcttcatcatttgtgtt |
148 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
26766719 |
atgctactttcttcatcatttgtgtt |
26766694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 27668873 - 27668995
Alignment:
| Q |
30 |
gaaataaaaataaatga--ttgttctgtgag-ctccaaaatcagacaagaataggaaagtttaaaagcggaata-tagtaatagtagaaatgttagtatg |
125 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||||||||||||||||| || | |||| ||||| |||||||| ||||||||||||||| |
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|
| T |
27668873 |
gaaataaaaataaatgtagttgttctgtgggactccaaaatcagacaagaataggaaatttaagaagcagaataatagtaataatagaaatgttagtatc |
27668972 |
T |
|
| Q |
126 |
ctactttcttcatcatttgtgtt |
148 |
Q |
| |
|
||||| |||||||||||| |||| |
|
|
| T |
27668973 |
ctactatcttcatcatttatgtt |
27668995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 26810630 - 26810582
Alignment:
| Q |
100 |
atagtaatagtagaaatgttagtatgctactttcttcatcatttgtgtt |
148 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| ||||| |
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|
| T |
26810630 |
atagtaatagtagaaatgttagtatgccactaccttcatcattcgtgtt |
26810582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 18823918 - 18823839
Alignment:
| Q |
157 |
aaaaataccccaactttcctttttaaaaacaagtaaagatgaaggtaattacgtaaatcacgatttaatttatgttaata |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| | | ||||| ||| ||||||| ||||||||||||||||||| |
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|
| T |
18823918 |
aaaaataccccaactttccttttgaaaaacaattaaaaagaagggtaaatacataaatcatgatttaatttatgttaata |
18823839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 18823239 - 18823311
Alignment:
| Q |
162 |
taccccaactttcctttttaaaaacaagtaaagatgaagg-taattacgtaaatcacgatttaatttatgtta |
233 |
Q |
| |
|
||||||| |||||||||| ||||||| || ||| ||||| ||| || |||||||| |||||||||||||||| |
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|
| T |
18823239 |
taccccagctttccttttggaaaacaattagagaagaagggtaaatatgtaaatcatgatttaatttatgtta |
18823311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 18343355 - 18343275
Alignment:
| Q |
157 |
aaaaataccccaactttcctttttaaaaacaagtaaagatgaa-ggtaattacgtaaatcacgatttaatttatgttaata |
236 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||||| || || || |||||||| | |||||||| |||||||| |
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|
| T |
18343355 |
aaaaacaccccaactttcctttttaaaaacaagtagaaatgaagggcaaatatgtaaatcatggtttaatttgtgttaata |
18343275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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