View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_116 (Length: 278)
Name: NF1271_high_116
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_116 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 2150852 - 2150621
Alignment:
| Q |
18 |
atctttactttttgtgacattaagcaagttgtctttcatgcttctcagcttacttatttagctaccttgacgacgacgttatttctacgaaccaagatgt |
117 |
Q |
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| T |
2150852 |
atctttactttttgtgacattaagcaagttgtctttcatgcttctcagcttacttatttagctaccttgacgacgacgttatttctgcgaaccaagatgt |
2150753 |
T |
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| Q |
118 |
atcattctaccattgaggatgcacaaacatacatgggagcactatttttcactgtcacagtagcaatgttcaatggaatatcagagctgaatatgactat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2150752 |
atcattctaccattgaggatgcacaaacatacatgggagcactatttttcactgtcacagtagcaatgttcaatggaatatcagagctgaatatgactat |
2150653 |
T |
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| Q |
218 |
catgaaacttcctatcttttacaagcaaagag |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2150652 |
catgaaacttcctatcttttacaagcaaagag |
2150621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 2163147 - 2163045
Alignment:
| Q |
147 |
tacatgggagcactatttttcactgtcacagtagcaatgttcaatggaatatcagagctgaatatgactatcatgaaacttcctatcttttacaagcaaa |
246 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| | |||||||||||| ||||||||||||||| |
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| T |
2163147 |
tacatgggagcactatttttcacagtcacagtagcaatgttcaatggaatatcagaactaaatatgacacttatgaaacttcctgtcttttacaagcaaa |
2163048 |
T |
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| Q |
247 |
gag |
249 |
Q |
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||| |
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| T |
2163047 |
gag |
2163045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 8537126 - 8537021
Alignment:
| Q |
147 |
tacatgggagcactatttttcactgtcaca---gtagcaatgttcaatggaatatcagagctgaatatgactatcatgaaacttcctatcttttacaagc |
243 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||| | ||||||||| || |||||||||||| |
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| T |
8537126 |
tacatgggagcactatttttcacactcacatgagtagcaatgttcaatggaatatcagaattgaatacgacacttatgaaactttctgtcttttacaagc |
8537027 |
T |
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| Q |
244 |
aaagag |
249 |
Q |
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|||||| |
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| T |
8537026 |
aaagag |
8537021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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