View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_131 (Length: 261)
Name: NF1271_high_131
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_131 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 3947649 - 3947881
Alignment:
| Q |
1 |
aaactagtgtcagcaaacacaatatgattgaaatgtttctataatcttttatttatttatgatattacagtgtataatcattaaaaatgttatattacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3947649 |
aaactagtgtcagcaaacacaatatgattgaaatgtttctataatcttttatttatttacgatattacagtgtataatcattaaaaatgttatattacac |
3947748 |
T |
|
| Q |
101 |
tgttttgttagagttgaaaatattcaaagttgataagttttagtgaaaatgttgaggaattacgtttttactcaatcatcacagtcatttcatacatact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3947749 |
tgttttgttagagttgaaaatattcaaagttgataagttttagtgaaaatgttgaggaattacgtttttactcaatcatcacaatcatttcatacatact |
3947848 |
T |
|
| Q |
201 |
tnnnnnnnnttgattacatcaacaacagtagat |
233 |
Q |
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| |||||||||||||||||||||||| |
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| T |
3947849 |
taaaaaaaattgattacatcaacaacagtagat |
3947881 |
T |
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