View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_134 (Length: 260)
Name: NF1271_high_134
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_134 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 29579130 - 29578930
Alignment:
| Q |
42 |
gtccttaacatccactgaatcctccaatggaattcatgcgtgttttggttgttctaactattcattttgggagaccattctgcaccgccccaatcaaggg |
141 |
Q |
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| T |
29579130 |
gtccttaacatccactgaatcctccaatggaattcatgcgtgtttgtgttgatctaactattcattttgggagaccattctgcaccgccccaatcaaggg |
29579031 |
T |
|
| Q |
142 |
tgggtctatctatatactgctctacatctgatcttacctcaatctcgttttcaatattcattagaaagtcttcaaaaaaggcatacattaggcagtataa |
241 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29579030 |
tgggtctatctaaatactgctctacatctgatcttacctctaactcgttttcaatattcattagaaagttttcaaaaaaggcatacattaggcagtataa |
29578931 |
T |
|
| Q |
242 |
t |
242 |
Q |
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|
| T |
29578930 |
t |
29578930 |
T |
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