View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_135 (Length: 258)
Name: NF1271_high_135
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_135 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 38840380 - 38840156
Alignment:
| Q |
25 |
tggttattcttagtttgtagtacctatattcttaattatactaccaccttatataatttgaacaaatggagggagaaggaaataaaaatgcagaagcacg |
124 |
Q |
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| T |
38840380 |
tggttattcttagtttgtagtacctatattcttaatta--ctaccaccttatataatttgaataaatggagggagaaggaaataaaaatgcagaagcacg |
38840283 |
T |
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| Q |
125 |
atacagaggaattcgtaggagaccatggggtaagtttgcagcagaaattcgtgacccaactagaaaaggctctcgtatttggcttggaacatttgaaact |
224 |
Q |
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| T |
38840282 |
atacagaggaattcgtaggagaccatggggtaagtttgcagcagaaattcgtgacccaactagaaaaggctctcgtatttggcttggaacatttgaaaca |
38840183 |
T |
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| Q |
225 |
gcagaacaagctgcacgtgcctatgat |
251 |
Q |
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| T |
38840182 |
gcagaacaagctgcacgtgcttatgat |
38840156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 30641718 - 30641828
Alignment:
| Q |
129 |
agaggaattcgtaggagaccatggggtaagtttgcagcagaaattcgtgacccaactagaaaaggctctcgtatttggcttggaacatttgaaactgcag |
228 |
Q |
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|||||||||||||| ||||||||||| || |||||||||||||||||||||||||| || ||||| | | || ||||||||||||||||| ||||| | |
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| T |
30641718 |
agaggaattcgtagaagaccatggggaaaatttgcagcagaaattcgtgacccaacaaggaaagggacaagaatatggcttggaacatttgatactgctg |
30641817 |
T |
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| Q |
229 |
aacaagctgca |
239 |
Q |
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| T |
30641818 |
aacaagctgca |
30641828 |
T |
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