View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_139 (Length: 254)
Name: NF1271_high_139
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_139 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 2851658 - 2851411
Alignment:
| Q |
6 |
actcccaaacaatttttactaaatagaatgtgaaaagtttgttcaatttactatatatttcccatcccaacgacaatccttcaactccttttcagactct |
105 |
Q |
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| T |
2851658 |
actcccaaacaatttttactaaatagaatgtgaaaagtttgttcaatttactatatatttcccatcccaacgacaatccttcaactccttttcaaactct |
2851559 |
T |
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| Q |
106 |
ctcggtaacaatggacgatagaatgagcgacttaacagattcaatcctcctttacatcctctccttcctaccaaccaaactcgctgcaacaacaaccatc |
205 |
Q |
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| T |
2851558 |
ctcggtaacaatggacgatagaatgagcgacttaacagattcaatcctcctttacatcctctccttcctaccaaccaaactcgctgcaacaacaaccatc |
2851459 |
T |
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| Q |
206 |
ctctcaaagagatacaaatccctatacctgcaactcctcaccctccac |
253 |
Q |
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| T |
2851458 |
ctctcaaagagatacaaatccctatacctccaacttctcaccctccac |
2851411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 27816365 - 27816269
Alignment:
| Q |
122 |
gatagaatgagcgacttaacagattcaatcctcctttacatcctctccttcctaccaaccaaactcgctgcaacaacaaccatcctctcaaagagat |
218 |
Q |
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| T |
27816365 |
gatagaattagcgagttacctgattcaatactcagtcacatcctctctttaattccaaccaaactcactgcgaccacaagcatcctctcaaagagat |
27816269 |
T |
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