View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_147 (Length: 252)
Name: NF1271_high_147
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_147 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 23587091 - 23587309
Alignment:
| Q |
11 |
attattctgcatatacataataataggaaagtgaattttattgtttataatagtgagagtgttgatcatggttttgcattggttgggcgataaacaattt |
110 |
Q |
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| T |
23587091 |
attattctgcataaacataataataggaaagtgaattttattgtttataatagtgagagtgttgatcatagttttgcattggttgggcgataaacaattt |
23587190 |
T |
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| Q |
111 |
tattcat------gctcatcagagcataatagtagaaaagggaattgtattgcttcagtatttggtaagaatggttgtgttccttagctgattgtgttta |
204 |
Q |
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| T |
23587191 |
tattcatgctcatgctcatcagagcataatagtagaaaagggaattgtattgcttcagtatttggtaagaatggttgtgttccttagctgattgtgttta |
23587290 |
T |
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| Q |
205 |
cttgaatcggtgttttcag |
223 |
Q |
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| T |
23587291 |
cttgaatcggtgttttcag |
23587309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 23596006 - 23596059
Alignment:
| Q |
37 |
gaaagtgaattttattgtttataatagtgagagtgttgatcatggttttgcatt |
90 |
Q |
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| T |
23596006 |
gaaagtgaattttattgtttatgattgtaagattgttgataatggttttgcatt |
23596059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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