View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_155 (Length: 251)
Name: NF1271_high_155
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_155 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 31720834 - 31721051
Alignment:
| Q |
34 |
ctccatttctcacgcatgacttctaaatataaattgagttttcagttttcannnnnnncaatgtgaatgttataagctctaactattttattcattttga |
133 |
Q |
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| T |
31720834 |
ctccatttctcacgcatgacttctaaatataaattgagttttcagttttcatttttttcaatgtgaatgttttaagctctaactattttattcattttga |
31720933 |
T |
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| Q |
134 |
aatgagtttcattacttatattctatttgctctttctcttattgtctccaattccatagccagtgatgacacatcatccatcattactcaatcgcaagcc |
233 |
Q |
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| T |
31720934 |
aatgagtttcattacttatattctatttgctctttctcttattgtctccaattccatagccagtgatgacacatcatccatcattactcaatcgcaatcc |
31721033 |
T |
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| Q |
234 |
atcagtgatggagagacc |
251 |
Q |
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|||||||||||||||||| |
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| T |
31721034 |
atcagtgatggagagacc |
31721051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 31699754 - 31699909
Alignment:
| Q |
96 |
gtgaatgttataagctctaactattttattcattttgaaatgagtttcattacttatattctatttgctctttctcttattgtctccaattccatagcca |
195 |
Q |
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|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31699754 |
gtgaatgttataagctctaactcttttatttattttgtaatgagtttcattacttatattctatttgctctttctcttattgtctccaattccatagcca |
31699853 |
T |
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| Q |
196 |
gtgatgacacatcatccatcattactcaatcgcaagccatcagtgatggagagacc |
251 |
Q |
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| T |
31699854 |
gtgatgacacatcatccatcattactcaatctcaatccatcagtgatggagagacc |
31699909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 31715022 - 31715178
Alignment:
| Q |
92 |
caatgtgaatgttataagctctaactattttattcattttgaaatgagtttcattacttatattctatttgctctttctcttattgtctccaattccata |
191 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||| |||||||| |
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| T |
31715022 |
caatgtgaatgttataagctctaacacttttattcattttgagatgagtttcattacttatattctatttgttctttctcttatagcctcctattccata |
31715121 |
T |
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| Q |
192 |
gccagtgatgacacatcatccatcattactcaatcgcaagccatcagtgatggagagacc |
251 |
Q |
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|| ||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
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| T |
31715122 |
gcaagtaatgacacatcatc---cattactcaatctcaatccatcagtgatggagagacc |
31715178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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