View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_162 (Length: 251)
Name: NF1271_high_162
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_162 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 41347493 - 41347251
Alignment:
| Q |
9 |
gaagaatattatgacatacaatatttttaggagtgattaattttaattagtggtgagacaatttaaaattaattataagagcgttaaaagtatcagattt |
108 |
Q |
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| T |
41347493 |
gaagaaaattatgacatacaatatttttaggagtgattaattttaattagtggtgagacaatttaaaattaattatatgagcgttaaaagtatcagattt |
41347394 |
T |
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| Q |
109 |
ataagagtgttaatggaaattagaatattgtattgttagcgacgtgtgccttgaactgagattaaaccaagtcagatttattttcatattttgtccttcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41347393 |
ataagagtgttaatggaaattagaatattgtattgttagcgacgtgtgcctttaactgagattaaaccgagtcagatttattttcatattttgtccttcc |
41347294 |
T |
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| Q |
209 |
ttcctattgaatctcacgcccgagccctcactctctcgatttc |
251 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41347293 |
ttcctattgaagctcacgcccgagccctcactctctcgatttc |
41347251 |
T |
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