View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_166 (Length: 246)

Name: NF1271_high_166
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_166
NF1271_high_166
[»] chr8 (9 HSPs)
chr8 (1-238)||(894462-894699)
chr8 (1-238)||(905944-906181)
chr8 (55-238)||(23423711-23423894)
chr8 (60-238)||(548710-548888)
chr8 (118-232)||(2436893-2437007)
chr8 (165-238)||(10201863-10201936)
chr8 (165-238)||(10208936-10209009)
chr8 (118-232)||(1963481-1963595)
chr8 (131-195)||(566313-566377)
[»] chr6 (4 HSPs)
chr6 (1-232)||(8294420-8294651)
chr6 (1-223)||(33257104-33257326)
chr6 (77-197)||(845027-845147)
chr6 (123-197)||(870311-870385)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-223)||(1222-1444)
[»] scaffold0184 (1 HSPs)
scaffold0184 (94-215)||(15188-15309)
[»] scaffold0078 (2 HSPs)
scaffold0078 (94-215)||(57535-57656)
scaffold0078 (94-146)||(22246-22298)
[»] chr5 (3 HSPs)
chr5 (166-238)||(13653230-13653302)
chr5 (166-239)||(13648175-13648248)
chr5 (166-239)||(13658703-13658776)
[»] chr1 (1 HSPs)
chr1 (118-204)||(5906141-5906227)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 894699 - 894462
Alignment:
Q  1 tgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttctggaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  894699 tgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtggttttctggaaag 894600  T
Q  101 aaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  894599 aaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggt 894500  T
Q  201 tcaactttggagagtgtggttaatggtgtgcctatgat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  894499 tcaactttggagagtgtggttaatggtgtgcctatgat 894462  T

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Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 905944 - 906181
Alignment:
Q  1 tgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttctggaaag 100  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| || |||  |||||||    
T  905944 tgtgggttgttagagttccaagtaaagatgttaactctgcttattttgttggagcaaaagatgatccattagagtatttaccaaatggtttcttggaaag 906043  T
Q  101 aaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  906044 aaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttgagtcattgtggttggggt 906143  T
Q  201 tcaactttggagagtgtggttaatggtgtgcctatgat 238  Q
    ||||||||||||| |||||||||||| |||||| ||||    
T  906144 tcaactttggagactgtggttaatggggtgcctgtgat 906181  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 23423711 - 23423894
Alignment:
Q  55 aaaaagatgatccattagattatttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattct 154  Q
    |||| |||||||||||| |||||||||||   | |||  ||||||| || |||||  | || ||||| |||||||||||||| ||||||||||| |||||    
T  23423711 aaaaggatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattct 23423810  T
Q  155 tggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgat 238  Q
    | ||||| | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||||    
T  23423811 tagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgat 23423894  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 548888 - 548710
Alignment:
Q  60 gatgatccattagattatttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 159  Q
    |||||||||||| |||||||||||   | |||  ||||||| || |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  548888 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 548789  T
Q  160 atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgat 238  Q
    || | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||||    
T  548788 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgat 548710  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 2436893 - 2437007
Alignment:
Q  118 tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgt 217  Q
    ||||| ||||||||||||||||||| ||| | || ||| ||||  ||||| |||||||||| |||||||| ||||| |||  ||||||  | ||||||||    
T  2436893 tggttattccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgt 2436992  T
Q  218 ggttaatggtgtgcc 232  Q
    |||  ||||||||||    
T  2436993 ggtgcatggtgtgcc 2437007  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 10201936 - 10201863
Alignment:
Q  165 tcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgat 238  Q
    |||||||| || ||| |||||||||||||||||  ||||||| | ||||||||||| |||||||||||| ||||    
T  10201936 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgat 10201863  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 10209009 - 10208936
Alignment:
Q  165 tcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgat 238  Q
    |||||||| || ||| |||||||||||||||||  ||||||| | ||||||||||| |||||||||||| ||||    
T  10209009 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgat 10208936  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 1963481 - 1963595
Alignment:
Q  118 tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgt 217  Q
    |||||||||||||||||||||||||  || | || ||| ||||  | || |||||||| ||||||  |||||||||||||  ||||||  | ||||||||    
T  1963481 tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgt 1963580  T
Q  218 ggttaatggtgtgcc 232  Q
    |||  ||||||||||    
T  1963581 ggtgtatggtgtgcc 1963595  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 566377 - 566313
Alignment:
Q  131 atgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggtt 195  Q
    |||||||||||||||||| |||||||||||| | ||||||| ||| |||||  |||||| |||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggatttttatgtcattttggtt 566313  T

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Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8294651 - 8294420
Alignment:
Q  1 tgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttctggaaag 100  Q
    |||||||||| |||| ||||||||||  |  ||| ||||| ||||||  |||| ||||  ||||||||||||| |||||||||| || |||| |||||||    
T  8294651 tgtgggttgtgagagctccaagtaaaaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaatggttttttggaaag 8294552  T
Q  101 aaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggt 200  Q
    ||| |||||||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||    
T  8294551 aacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagt 8294452  T
Q  201 tcaactttggagagtgtggttaatggtgtgcc 232  Q
    ||||||||||||||||||||||| || |||||    
T  8294451 tcaactttggagagtgtggttaacggcgtgcc 8294420  T

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Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33257104 - 33257326
Alignment:
Q  1 tgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttctggaaag 100  Q
    |||||||||| |||| ||||||||||  |  ||| ||||||||||||  |||| ||||  |||| |||||||| ||||||||||  | |||| | |||||    
T  33257104 tgtgggttgtgagagctccaagtaaacattctagttctgcttattttaatggacaaaacaatgaaccattagagtatttaccaaacggttttgtcgaaag 33257203  T
Q  101 aaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggt 200  Q
    ||| ||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  33257204 aacaaaagagaagggattagttgttacatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagt 33257303  T
Q  201 tcaactttggagagtgtggttaa 223  Q
    |||||||||||||||||||||||    
T  33257304 tcaactttggagagtgtggttaa 33257326  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 845147 - 845027
Alignment:
Q  77 tttaccaagtgattttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggt 176  Q
    |||||||| || |||| |||||||||| ||||  || || || || |||||||  |||||||||||| |||| |||||||||||| | |||||||||||     
T  845147 tttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtggg 845048  T
Q  177 tttttgagtcattgtggttgg 197  Q
    ||||| | |||||||||||||    
T  845047 tttttaactcattgtggttgg 845027  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 870385 - 870311
Alignment:
Q  123 gttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttgg 197  Q
    |||||||  |||||||||||| |||| |||||||||||| | ||||||||||| ||||| | |||||||||||||    
T  870385 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttgg 870311  T

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Target: scaffold0428 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1222 - 1444
Alignment:
Q  1 tgtgggttgttagagttccaagtaaagttgttagctctgcttattttgttggagaaaaagatgatccattagattatttaccaagtgattttctggaaag 100  Q
    |||||||||| |||| ||||||||||  |  ||| ||||||||||||  |||| ||||  |||| |||||||| ||||||||||  | |||| | |||||    
T  1222 tgtgggttgtgagagctccaagtaaacattctagttctgcttattttaatggacaaaacaatgaaccattagagtatttaccaaacggttttgtcgaaag 1321  T
Q  101 aaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggt 200  Q
    ||| ||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  1322 aacaaaagagaagggattagttgttacatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagt 1421  T
Q  201 tcaactttggagagtgtggttaa 223  Q
    |||||||||||||||||||||||    
T  1422 tcaactttggagagtgtggttaa 1444  T

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Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 15309 - 15188
Alignment:
Q  94 tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtgg 193  Q
    ||||||||||||||||||| || ||  || |  ||||||||||||| |||||||| || |||   ||| | ||| ||||||| ||||| |||||||||||    
T  15309 tggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtgg 15210  T
Q  194 ttggggttcaactttggagagt 215  Q
    ||||  ||||  ||||||||||    
T  15209 ttggaattcagttttggagagt 15188  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 57535 - 57656
Alignment:
Q  94 tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtgg 193  Q
    ||||||||||||||||||| || ||  || |  ||||||||||||| |||||||| || |||   ||| | ||| ||||||| ||||| |||||||||||    
T  57535 tggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtgg 57634  T
Q  194 ttggggttcaactttggagagt 215  Q
    ||||  ||||  ||||||||||    
T  57635 ttggaattcagttttggagagt 57656  T

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Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 22246 - 22298
Alignment:
Q  94 tggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagtt 146  Q
    |||||||||| |||||||| || ||| || | |||||||||||||||||||||    
T  22246 tggaaagaacaaaagaaaaaggtttgattttaccatcatgggcaccacaagtt 22298  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 13653230 - 13653302
Alignment:
Q  166 caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgat 238  Q
    ||||||||| ||||||||  ||| |||| |||  ||| ||||||||||||||||||  |||||||||||||||    
T  13653230 caattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgat 13653302  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 13648175 - 13648248
Alignment:
Q  166 caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgata 239  Q
    ||||||||| ||||||||  |||  ||| |||  |||||||||||| |||||||||  ||||||||||||||||    
T  13648175 caattggtgcttttttgacacataatgggtggaattcaactttggaaagtgtggtttgtggtgtgcctatgata 13648248  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 13658703 - 13658776
Alignment:
Q  166 caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgata 239  Q
    |||||||||  |||||||  ||| |||| |||  ||| ||||||||||||||||||  ||||||||||||||||    
T  13658703 caattggtgcctttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgata 13658776  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 5906141 - 5906227
Alignment:
Q  118 tggttgttccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaa 204  Q
    ||||| |||||||||||||||| ||  |||| || ||| ||||   |||| ||||||| || |||||||||||||||||| ||||||    
T  5906141 tggttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa 5906227  T

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