View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_167 (Length: 244)
Name: NF1271_high_167
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_167 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 113990 - 114217
Alignment:
| Q |
24 |
attctctccctcatcctaatcttaattaatgtcattcattattcaagaacacaagaaacaaaacagaatcttgtttcaataaataaagaaaaaa-ttgtt |
122 |
Q |
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| T |
113990 |
attctctccctcatcctaatcttaat----gtcattcattattcaagaacacaagaaacaaaacagaatcttgtttcaataaataaagaaaaaacttgtt |
114085 |
T |
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| Q |
123 |
tgtaaattgggggtgaccggtcacaacaactagacctggttatatcccttcgtctctggtaattcatttca-------------attcatattgggaacc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
114086 |
tgtaaattgggggtgaccggtcacaacaactagacctggttatatcccttcgtctctggtaattcatttcaattatattcattcattcatattgggaacc |
114185 |
T |
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| Q |
210 |
cgttcggatcgcattattgatcatcaaggtta |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
114186 |
cgttcggatcgcattattgatcatcaaggtta |
114217 |
T |
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