View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_179 (Length: 220)
Name: NF1271_high_179
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_179 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 34572132 - 34572348
Alignment:
| Q |
4 |
tttgtgtttcctctgtttgtgtcatatgcttctaataactcttgtatgcaattttcagtcgcgaactgcacataccttcccatgttatggttacaaatgg |
103 |
Q |
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| T |
34572132 |
tttgtgtttcctctgtttgtgtcataagcttctaataactcttgtatgcaatattcagtcgcgaactgcacataccttcccatgttatggttacaaatgg |
34572231 |
T |
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| Q |
104 |
ttcagagattaacacttgtttgaaatttagacaattcaatccaagcagaccataagatagtacttatggttttaaaaaattgcaatggttctagttgtat |
203 |
Q |
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| T |
34572232 |
ttcagagattaacacttgtttgaaatttagacaattcaatccaagcagaccataagatagtacttatggttttaaaaaattgtaatggttctagttgtat |
34572331 |
T |
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| Q |
204 |
tgaaattgccgaaaata |
220 |
Q |
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| T |
34572332 |
tgaaattgccgaaaata |
34572348 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 56282447 - 56282525
Alignment:
| Q |
3 |
gtttgtgtttcctctgtttgtgtcatatgcttctaataactcttgtatgcaattttcagtcgcgaactgcacatacctt |
81 |
Q |
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| T |
56282447 |
gtttgagtttcctctgtttgtgtccgaagctgctagtaactcttgtatgcaactttcacttgcaaactgtacatacctt |
56282525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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