View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_18 (Length: 553)

Name: NF1271_high_18
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_18
NF1271_high_18
[»] chr4 (11 HSPs)
chr4 (62-543)||(7615597-7616078)
chr4 (62-542)||(7606584-7607082)
chr4 (64-363)||(7637612-7637911)
chr4 (62-363)||(7629166-7629467)
chr4 (379-543)||(7637414-7637578)
chr4 (132-362)||(7655483-7655710)
chr4 (387-543)||(7628968-7629124)
chr4 (382-536)||(7655748-7655902)
chr4 (132-269)||(39098306-39098443)
chr4 (495-534)||(39098047-39098086)
chr4 (481-537)||(7633703-7633759)
[»] chr7 (5 HSPs)
chr7 (62-543)||(8935374-8935873)
chr7 (148-528)||(8910525-8910919)
chr7 (62-304)||(8934433-8934675)
chr7 (62-295)||(8929978-8930211)
chr7 (439-537)||(8918826-8918924)
[»] chr3 (2 HSPs)
chr3 (79-362)||(40146679-40146959)
chr3 (132-359)||(8103025-8103252)
[»] chr6 (2 HSPs)
chr6 (132-361)||(6501058-6501283)
chr6 (241-269)||(11969547-11969575)
[»] chr8 (1 HSPs)
chr8 (244-362)||(15190642-15190757)


Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 62 - 543
Target Start/End: Complemental strand, 7616078 - 7615597
Alignment:
Q  62 ctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggc 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7616078 ctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggc 7615979  T
Q  162 agttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgg 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615978 agttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgg 7615879  T
Q  262 gctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615878 gctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctt 7615779  T
Q  362 tcgtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaact 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615778 tcgtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaact 7615679  T
Q  462 aaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7615678 aaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagtgcttttaactcacctttggtgctctgtg 7615597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 62 - 542
Target Start/End: Complemental strand, 7607082 - 7606584
Alignment:
Q  62 ctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggc 161  Q
    |||||||||| |||||   ||| ||||||| |||||| ||||||||||| || || | ||| | | ||| ||| |||||||| |||||||| ||||||||    
T  7607082 ctgacatcctggaaccggtctacgtacctctaattgtcgattcattttttgccttcatcggagataaaaactatgaaggcacgtcaaaaccattgttggc 7606983  T
Q  162 agttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgg 261  Q
     |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7606982 tgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcatgg 7606883  T
Q  262 gctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctt 361  Q
    ||||||||||||||  ||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  7606882 gctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttcctt 7606783  T
Q  362 tc------------------gtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaa 443  Q
    ||                    | || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7606782 tcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaactttgtttatcaaataggttatttcatttcacaaa 7606683  T
Q  444 agagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgt 542  Q
     ||||||||  ||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7606682 ggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacctttggtgctctgt 7606584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 64 - 363
Target Start/End: Complemental strand, 7637911 - 7637612
Alignment:
Q  64 gacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcag 163  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||| || |||||| |||  ||   |||||| |||||||| |||||||| ||||||||||    
T  7637911 gacatcctagaacccacctacgtacctccaattgttgatttattatttgctttatccgaagtaagaagctatgaaggcacatcaaaaccattgttggcag 7637812  T
Q  164 ttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggc 263  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||||||| |||||    
T  7637811 ttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatttcatcaattcctgggc 7637712  T
Q  264 tgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctttc 363  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  7637711 tgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacggcctatacgatttcctttc 7637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 62 - 363
Target Start/End: Complemental strand, 7629467 - 7629166
Alignment:
Q  62 ctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggc 161  Q
    ||||||||||||||||   ||| ||||||| |||||| |||||| | || || || |  || | | |||||||||||||||| |||||||| ||||||||    
T  7629467 ctgacatcctagaaccggtctacgtacctcaaattgtcgattcactatttgcctttataggagataaaagctacgaaggcacgtcaaaaccattgttggc 7629368  T
Q  162 agttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgg 261  Q
     ||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  7629367 tgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggcatttcatcaattcatgg 7629268  T
Q  262 gctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctt 361  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||   || |||||||||||||||||| ||||||  ||||||||||||||||    
T  7629267 gctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaacttcccatacgatttcctt 7629168  T
Q  362 tc 363  Q
    ||    
T  7629167 tc 7629166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 379 - 543
Target Start/End: Complemental strand, 7637578 - 7637414
Alignment:
Q  379 ttgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatg 478  Q
    ||||||||||| |||| |||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||  ||||| | |||||||||||||| |    
T  7637578 ttgagtttttcatcgtttaatgaggaaaaatattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacg 7637479  T
Q  479 atgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 543  Q
    | ||||| || |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  7637478 aagagatcggcaccaccaaaatatcttctctacaagcacttttaactcacgtttggtgctatgtg 7637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 132 - 362
Target Start/End: Original strand, 7655483 - 7655710
Alignment:
Q  132 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 231  Q
    |||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| || || ||||| |     ||||||||||| || | |||||||    
T  7655483 ctacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacgga 7655582  T
Q  232 gagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaa 331  Q
     ||||   |||||||||||||||||| ||||||||||| |||||| ||||   ||||||||||||||||||  ||||||| || ||||||||||||||||    
T  7655583 cagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttg---tcatcatcaaatatctaactccccaacgctggagcgttggtttccaa 7655679  T
Q  332 atggtgttcaacagcccatacgatttccttt 362  Q
    ||||  ||||||  || ||||||||||||||    
T  7655680 atggaattcaacgacctatacgatttccttt 7655710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 387 - 543
Target Start/End: Complemental strand, 7629124 - 7628968
Alignment:
Q  387 ttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagatt 486  Q
    |||||| |||||||| |||||||||||||||||||||||  |||| || || ||||| |||||||| || ||||| ||||| ||||||||  | ||||||    
T  7629124 ttcgtcatctaatgatgaaaaactttgtttatcaaatagattattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagatt 7629025  T
Q  487 ggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 543  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||||||||| ||||    
T  7629024 ggtaacatcaaaatatcttctctacaagcgcttctaactcatgtttggtgctatgtg 7628968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 382 - 536
Target Start/End: Original strand, 7655748 - 7655902
Alignment:
Q  382 agtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatg 481  Q
    ||||||||||| ||| |||| |||||||| | | ||||| | ||||||||||| || |||||  |||||||  | ||||| ||||||||| ||||||  |    
T  7655748 agtttttcgtcttctgatgacgaaaaactctttctatcagagaggatatttcactttacaaagaagaaaatcatgcaactgaaatcgaaagtcaatgcag 7655847  T
Q  482 agattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtg 536  Q
    |||||| |||||  |||||||||||||||||||||||||||||||| ||||||||    
T  7655848 agattgataccaaaaaaatatcttctctacaagcgcttttaactcatctttggtg 7655902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 132 - 269
Target Start/End: Complemental strand, 39098443 - 39098306
Alignment:
Q  132 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 231  Q
    |||||||||||| |||||||| ||| | ||||||||||| || ||||| ||||| |||||||| ||||| | |||  |||| |||||||| || || ||     
T  39098443 ctacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgttgtcgatggt 39098344  T
Q  232 gagtctgtgtggcatttcatcaattcatgggctgaaat 269  Q
     ||||  | ||||||||||||||||||||| |||||||    
T  39098343 aagtcgttttggcatttcatcaattcatggtctgaaat 39098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 534
Target Start/End: Complemental strand, 39098086 - 39098047
Alignment:
Q  495 caaaatatcttctctacaagcgcttttaactcacctttgg 534  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  39098086 caaaatatcttctttacaagcacttttaactcacctttgg 39098047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 537
Target Start/End: Complemental strand, 7633759 - 7633703
Alignment:
Q  481 gagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 537  Q
    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  7633759 gagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 7633703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 62 - 543
Target Start/End: Original strand, 8935374 - 8935873
Alignment:
Q  62 ctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggc 161  Q
    ||||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||||||||  |||  ||||||||||||||| |||||||| ||||||||    
T  8935374 ctgacattctagaacccacctacgtaccaccaattgttgattcattttttgctttaaccgatgttagaagctacgaaggcacatcaaaaccattgttggc 8935473  T
Q  162 agttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgg 261  Q
    |||||||||||| ||| || ||||||||||||| ||||||||||| || ||||| | |||| |||||||| ||||||||||||||||||||||||| |||    
T  8935474 agttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcttgg 8935573  T
Q  262 gctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttcctt 361  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||| ||| |||||||||||||    
T  8935574 gctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaacggccaatacgatttcctt 8935673  T
Q  362 tcgttt------------------acggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaa 443  Q
    ||  ||                  ||  |||||  |||||||||| |||||   |||| |||||||||||||| |||||||| |||||||||||||||||    
T  8935674 tcactttggagcaacaaaagaatcactctgatgggttgagttttttgtcgttagatgatgaaaaactttgtttctcaaatagaatatttcatttcacaaa 8935773  T
Q  444 agagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 543  Q
    ||||||||| ||||| || ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  8935774 agagaaaatcgtacagctgaaattaaaaatcaatgaagagattggtaccatcaaaatatcttctctacaagcgcctttaactcacctttggtgctgtgtg 8935873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 148 - 528
Target Start/End: Original strand, 8910525 - 8910919
Alignment:
Q  148 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 247  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 8910624  T
Q  248 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 347  Q
    |||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||| |||    
T  8910625 tcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa----gttcaacggcc 8910720  T
Q  348 catacgatttcctttc------------------gtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggata 429  Q
     |||||||||||||||                  | | ||  |||||  ||||||||||| |||  |||||||||||||| |||||||||||||||| ||    
T  8910721 tatacgatttcctttcactttggagcaacaaaaggatcactctgatgggttgagtttttcatcgcttaatgaggaaaaacattgtttatcaaataggtta 8910820  T
Q  430 tttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcac 528  Q
    |||||||||||||| ||||||||  ||||| | |||||||||||||| || ||||| || |||| ||||||||||||||||||||| ||||||||||||    
T  8910821 tttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccaccaaaatatcttctctacaagcacttttaactcac 8910919  T

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Target: chr7; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 62 - 304
Target Start/End: Original strand, 8934433 - 8934675
Alignment:
Q  62 ctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggc 161  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||  ||||||||||||||| |||||||| ||||||||    
T  8934433 ctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaaggcacatcaaaaccattgttggc 8934532  T
Q  162 agttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgg 261  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| || ||||| | |||| |||||||| |||||||||||||||||||||||||||||    
T  8934533 agttcaagtaacggagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatttcatcaattcatgg 8934632  T
Q  262 gctgaaatatcacgtagttgttgtcatcatcaaatatctaaac 304  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  8934633 gctgaaatctcacgtagttgttgtcatcatcaaatatttaaac 8934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 62 - 295
Target Start/End: Original strand, 8929978 - 8930211
Alignment:
Q  62 ctgacatcctagaacctacctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggc 161  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||  ||||||||||| ||| |||||||| ||||||||    
T  8929978 ctgacattctagaacccacctacgtacctccaattgttgattcattttttgctttaaccggtgttagaagctacgaagtcacatcaaaaccattgttggc 8930077  T
Q  162 agttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgg 261  Q
    | |||||||||| ||| || ||||||||||||| ||||||||||| || ||||| | |||| |||| ||| |||||||||| ||||||||||||||||||    
T  8930078 atttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgatggaaagtctgtgtgacatttcatcaattcatgg 8930177  T
Q  262 gctgaaatatcacgtagttgttgtcatcatcaaa 295  Q
    |||||||| |||||||||||||||||||||||||    
T  8930178 gctgaaatctcacgtagttgttgtcatcatcaaa 8930211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 537
Target Start/End: Original strand, 8918826 - 8918924
Alignment:
Q  439 acaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 537  Q
    ||||| ||||||||  ||||||| ||||| ||| ||||    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  8918826 acaaaggagaaaatcttacaactgaaatcaaaagtcaacacagagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 8918924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 362
Target Start/End: Original strand, 40146679 - 40146959
Alignment:
Q  79 acctatgtacctccaattgttgattcatttttcgctttaaccggggttgaaagctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagc 178  Q
    ||||| || ||||| || || |||||||||||  | |||||| | ||| |||  ||||||||||| ||| |||| ||||| || || ||||| || |||     
T  40146679 acctacgttcctcccatcgtcgattcattttttccattaaccagagttaaaaattacgaaggcacatcacaaccattgttagctgtgcaagtgacagagt 40146778  T
Q  179 tagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtag 278  Q
    ||||||||||  | || |||||||   | || |||||||  || ||||||||||||||    |||| |||||| |||||||||||  |||| || ||| |    
T  40146779 tagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagtccacatggcttttcattaattcatgggcgaaaatctcgcgtgg 40146878  T
Q  279 ttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcccatacgatttccttt 362  Q
    |||||| ||  ||||| |||| |||| |  ||| ||||| ||||||||||||| |||| ||||||| |||||||||||||||||    
T  40146879 ttgttg-ca--atcaagtatccaaactcataacgctagaacgttggtttccaagtggtattcaacatcccatacgatttccttt 40146959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 132 - 359
Target Start/End: Complemental strand, 8103252 - 8103025
Alignment:
Q  132 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 231  Q
    |||||||||||| ||| |||| ||||| || || ||||| || ||| |||||||||| || ||||||||||   | || |||||||| || ||||| |||    
T  8103252 ctacgaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatgga 8103153  T
Q  232 gagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaa 331  Q
       || |  ||| ||||||| ||||| ||||||||||| |||||| || |||||    |||||| ||| |||| | ||||||| || ||||||||||||     
T  8103152 acttcggcatggtatttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccag 8103053  T
Q  332 atggtgttcaacagcccatacgatttcc 359  Q
    ||||| |||||   ||||||||||||||    
T  8103052 atggtattcaatgtcccatacgatttcc 8103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 361
Target Start/End: Complemental strand, 6501283 - 6501058
Alignment:
Q  132 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 231  Q
    |||||||||||  |||||||| ||| | ||||| ||||| || ||| |||||| |||| | |||||||| |     ||||||||||| |||  ||  |||    
T  6501283 ctacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtgga 6501184  T
Q  232 gagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaa 331  Q
     ||||  |||||||||| |||| ||| ||||||||||| |||||| |||||||   | |||||||||| |||| |||| ||||||| |||| ||||||||    
T  6501183 aagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgttg---taatcaaatatccaaactcccatcactagaacgtt-gtttccaa 6501088  T
Q  332 atggtgttcaacagcccatacgatttcctt 361  Q
    ||| | |||| |   |||||||||||||||    
T  6501087 atgatattcagcgttccatacgatttcctt 6501058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 11969575 - 11969547
Alignment:
Q  241 tggcatttcatcaattcatgggctgaaat 269  Q
    |||||||||||||||||||||||||||||    
T  11969575 tggcatttcatcaattcatgggctgaaat 11969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 15190642 - 15190757
Alignment:
Q  244 catttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 343  Q
    |||||||||||||||  ||||||||| |||||| ||| ||| ||||   ||||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  15190642 catttcatcaattcactggctgaaatctcacgtggttcttgccatc---aaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaac 15190738  T
Q  344 agcccatacgatttccttt 362  Q
      |||||||||||||||||    
T  15190739 gtcccatacgatttccttt 15190757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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