View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_22 (Length: 528)
Name: NF1271_high_22
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 384
Target Start/End: Original strand, 37218059 - 37218435
Alignment:
| Q |
9 |
caacaatatggaaagagatgaaaaggtagagttcttgacaatttacttattgatatatggaaaacatatggaaggtgtagatgaaggattaataaggata |
108 |
Q |
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| T |
37218059 |
caacaaaatggaaagagatgaaaaggtagagttcttgacaatttacttattgatatatggaaaacatatggaaggtgtagatgaaggattaatgaggata |
37218158 |
T |
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| Q |
109 |
atcctttatatacaagagctcaaatgagctgaagaagaaggtgtgagtatttgctcttatgcatgaaattttgtgagaaacaaagataatggagttttag |
208 |
Q |
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| T |
37218159 |
atcctttatatacaagagctcaaatgagctgaagaagaaggtgtgagtatttgctcttatgcctgaaattttgtgataaacaaagataatggagttttag |
37218258 |
T |
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| Q |
209 |
aaatgttggtatgagtgagtgatttgatatataaaaatatacaccaacattaataaggatgaatcgagacttttagagagaagtgcagagg-aaaaaata |
307 |
Q |
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| T |
37218259 |
aaatgttggtatgagtgagtgatttgatatataaaaatatacaccaacattaataaggatgaatcgagacttttggagagaagtgcagaggaaaaaaata |
37218358 |
T |
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| Q |
308 |
atgatctattataatttcggtaatcgggtaagcctaagaaattgtaaggttattgaataatgtagtcaccacacaag |
384 |
Q |
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| T |
37218359 |
atgatctattataatttcggtaatcgggtaagcctaagaaattgtaaggttattgaataatgtagtcaccacacaag |
37218435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 400 - 496
Target Start/End: Original strand, 37218424 - 37218519
Alignment:
| Q |
400 |
tcaccacacaagtttaaaaaggggcatagctagcataattttgttggcgaaattgagggaacgatctaaacaacaatgaatcaatattttaggacca |
496 |
Q |
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| T |
37218424 |
tcaccacacaagtttaaaaaggggcatagctagcataattttgttggcgaaattgagggaacg-tctaaacaacaatgaatcaatatttcaggacca |
37218519 |
T |
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