View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_27 (Length: 485)

Name: NF1271_high_27
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_27
NF1271_high_27
[»] chr8 (12 HSPs)
chr8 (17-460)||(1979291-1979735)
chr8 (280-338)||(20154076-20154133)
chr8 (280-338)||(20203337-20203394)
chr8 (241-338)||(2517108-2517209)
chr8 (317-375)||(29072504-29072562)
chr8 (292-326)||(30153513-30153547)
chr8 (239-284)||(3066118-3066163)
chr8 (274-338)||(6501496-6501559)
chr8 (239-283)||(7187916-7187960)
chr8 (291-331)||(23489805-23489845)
chr8 (292-332)||(24362330-24362370)
chr8 (292-348)||(31551847-31551903)
[»] chr7 (11 HSPs)
chr7 (249-342)||(27012121-27012213)
chr7 (280-350)||(23948381-23948450)
chr7 (280-338)||(44287849-44287906)
chr7 (292-331)||(40688891-40688930)
chr7 (262-339)||(38957325-38957402)
chr7 (275-351)||(17285052-17285127)
chr7 (310-342)||(23112677-23112709)
chr7 (310-342)||(23112732-23112764)
chr7 (274-338)||(37775983-37776046)
chr7 (239-271)||(40714957-40714989)
chr7 (274-338)||(42720885-42720948)
[»] chr4 (5 HSPs)
chr4 (262-321)||(47665841-47665899)
chr4 (274-332)||(36768844-36768901)
chr4 (283-332)||(55258425-55258473)
chr4 (292-351)||(50699157-50699217)
chr4 (239-331)||(6424163-6424254)
[»] chr2 (8 HSPs)
chr2 (249-333)||(5461140-5461222)
chr2 (239-283)||(9956934-9956978)
chr2 (292-335)||(28341328-28341371)
chr2 (292-327)||(38738423-38738458)
chr2 (292-342)||(894053-894103)
chr2 (292-366)||(43886567-43886641)
chr2 (274-331)||(18841008-18841064)
chr2 (279-331)||(28369805-28369856)
[»] chr1 (5 HSPs)
chr1 (292-345)||(41319497-41319550)
chr1 (274-342)||(18556021-18556088)
chr1 (292-358)||(26777389-26777456)
chr1 (262-320)||(13810516-13810573)
chr1 (293-338)||(1118409-1118454)
[»] scaffold0027 (1 HSPs)
scaffold0027 (299-358)||(145901-145960)
[»] chr6 (4 HSPs)
chr6 (291-338)||(34625735-34625782)
chr6 (243-285)||(11602816-11602858)
chr6 (292-346)||(32577476-32577530)
chr6 (296-365)||(6294552-6294621)
[»] chr5 (4 HSPs)
chr5 (239-282)||(29816969-29817012)
chr5 (291-329)||(19045568-19045606)
chr5 (249-338)||(15086699-15086787)
chr5 (249-313)||(39219817-39219880)
[»] chr3 (6 HSPs)
chr3 (296-331)||(25086281-25086316)
chr3 (281-339)||(31221711-31221769)
chr3 (239-321)||(39981665-39981745)
chr3 (270-331)||(10268477-10268537)
chr3 (292-333)||(49636838-49636879)
chr3 (294-342)||(36301990-36302038)


Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 1979735 - 1979291
Alignment:
Q  17 tgtaggaaaattttggttgagttgcatagtttgtgcaaagtcacgtgctttgcacgaggatgttgagctgagacaagggtttggagagtaaatggtggta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979735 tgtaggaaaattttggttgagttgcatagtttgtgcaaagtcacgtgctttgcacgaggatgttgagctgagacaagggtttggagagtaaatggtggta 1979636  T
Q  117 cttcaatttcaacatttgggttttgaagggnnnnnnn-gtttgtttgtattgaagagagaaaatagggctaacatattgttaattttcttttattttgag 215  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1979635 cttcaatttcaacatttgggttttgaagggttttttttgtttgtttgtattgaagagagaaaatagggctagcatattgttaattttcttttattttgag 1979536  T
Q  216 aaaaggggaaatgcatttgttggtgtagcacccacacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaa 315  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1979535 aaaaggggaaatgcatttgttagtgtagcacccatacctctgatcaaaggcgtgtccggtgtctgacattgacactatgtgattacatttaattaattaa 1979436  T
Q  316 ttttttcaaattattaccggtgttgacttgttagtggcgtgtctggtgtccgtgcttcatgtaagagcttgactttgtacgacatagttcgaatctgaac 415  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979435 ttttctcaaattattaccggtgttgacttgttagtggcgtgtctggtgtccgtgcttcatgtaagagcttgactttgtacgacatagttcgaatctgaac 1979336  T
Q  416 agggacagttgtaaatatggtcattagtgcatcgttattaatgat 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1979335 agggacagttgtaaatatggtcattagtgcatcgttattaatgat 1979291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 20154076 - 20154133
Alignment:
Q  280 gacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| || ||||||||||    
T  20154076 gacactgacac-atgtgattgcatttaattaattcattttttcaagtttttaccggtgt 20154133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 20203394 - 20203337
Alignment:
Q  280 gacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| || ||||||||||    
T  20203394 gacactgacac-atgtgattgcatttaattaattcattttttcaagtttttaccggtgt 20203337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 2517209 - 2517108
Alignment:
Q  241 tagcacccacacctctgatcaaaggcgtgtccggtgtctgacactgacacta----tgtgattacatttaattaattaattttttcaaattattaccggt 336  Q
    |||||||||||| ||||||||||||| |||| ||| ||||||||  |||  |    |||  ||||||| |||||||| ||||| ||||||||||||||||    
T  2517209 tagcacccacacttctgatcaaaggcatgtctggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggt 2517110  T
Q  337 gt 338  Q
    ||    
T  2517109 gt 2517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 29072504 - 29072562
Alignment:
Q  317 tttttcaaattattaccggtgttgacttgttagtggcgtgtctggtgtccgtgcttcat 375  Q
    ||||||||||||||| |||||| ||| ||| |||| |||||| |||||| |||||||||    
T  29072504 tttttcaaattattatcggtgtcgacgtgtgagtgtcgtgtccggtgtctgtgcttcat 29072562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Original strand, 30153513 - 30153547
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaat 326  Q
    |||||||||||||||||||||||||||||| ||||    
T  30153513 atgtgattacatttaattaattaattttttaaaat 30153547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 3066163 - 3066118
Alignment:
Q  239 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgacac 284  Q
    ||||||||  |||||||||||| ||||| |||||||||||||||||    
T  3066163 tgtagcactgacacctctgatctaaggcatgtccggtgtctgacac 3066118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 6501559 - 6501496
Alignment:
Q  274 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    ||||||||||| ||||| ||||| ||||||||||||| || ||| | ||||||||||||| ||||    
T  6501559 gtgtctgacaccgacac-atgtggttacatttaattatttcattctctcaaattattaccagtgt 6501496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 7187916 - 7187960
Alignment:
Q  239 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgaca 283  Q
    ||||||||| ||||||||||||||||||||||  | |||||||||    
T  7187916 tgtagcaccgacacctctgatcaaaggcgtgtatgttgtctgaca 7187960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 23489845 - 23489805
Alignment:
Q  291 tatgtgattacatttaattaattaattttttcaaattatta 331  Q
    |||||| |||||||||||||| | |||||||||||||||||    
T  23489845 tatgtggttacatttaattaaatcattttttcaaattatta 23489805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 24362370 - 24362330
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattattac 332  Q
    ||||||||||||| |||||||| ||||||||||||| ||||    
T  24362370 atgtgattacattcaattaattcattttttcaaatttttac 24362330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 31551847 - 31551903
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgtta 348  Q
    ||||||||| ||| |||| ||| ||||| |||||||||||||||| ||||| |||||    
T  31551847 atgtgattatattcaatttattcattttctcaaattattaccggtattgacatgtta 31551903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 27012213 - 27012121
Alignment:
Q  249 acacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgttgac 342  Q
    |||||||||||| ||||| | || |||||| ||||  ||||| |||||| ||||||||||||||| ||||| ||||||||| ||| ||||||||    
T  27012213 acacctctgatcgaaggcatatctggtgtccgacatagacac-atgtgaatacatttaattaattcattttctcaaattatgaccagtgttgac 27012121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 23948450 - 23948381
Alignment:
Q  280 gacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgttagt 350  Q
    ||||||||||| || |||||||||| |||||||| ||||||||||||||||| | |||| ||| |||||||    
T  23948450 gacactgacac-atatgattacattcaattaattgattttttcaaattattatcagtgtcgacatgttagt 23948381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 44287906 - 44287849
Alignment:
Q  280 gacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| || ||||||||||    
T  44287906 gacactgacac-atgtgattgcatttaattaattcattttttcaagtttttaccggtgt 44287849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 40688930 - 40688891
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattatta 331  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  40688930 atgtgattacatttaattaattcattttatcaaattatta 40688891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 38957325 - 38957402
Alignment:
Q  262 aaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttt-tcaaattattaccggtgtt 339  Q
    ||||||||||  ||||  ||||||||||| ||||||||||||| |||||||| |||||| ||||||||| ||| |||||    
T  38957325 aaggcgtgtctagtgtacgacactgacac-atgtgattacattcaattaatttatttttctcaaattatcaccagtgtt 38957402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 17285127 - 17285052
Alignment:
Q  275 tgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgttagtg 351  Q
    |||||||||| ||||| ||||||||| ||| |||||  | ||| | |||||||||||  ||||||||||||||||||    
T  17285127 tgtctgacacagacac-atgtgattaaattgaattatatcattctctcaaattattattggtgttgacttgttagtg 17285052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 23112677 - 23112709
Alignment:
Q  310 aattaattttttcaaattattaccggtgttgac 342  Q
    ||||||||||||||||||||||||||| |||||    
T  23112677 aattaattttttcaaattattaccggtattgac 23112709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 23112732 - 23112764
Alignment:
Q  310 aattaattttttcaaattattaccggtgttgac 342  Q
    ||||||||||||||||||||||||||| |||||    
T  23112732 aattaattttttcaaattattaccggtattgac 23112764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 37776046 - 37775983
Alignment:
Q  274 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    |||||| |||||||||| |||||||||||||||||||  | ||||| |||||||| ||| |||||    
T  37776046 gtgtcttacactgacac-atgtgattacatttaattatgtcattttctcaaattactactggtgt 37775983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 40714957 - 40714989
Alignment:
Q  239 tgtagcacccacacctctgatcaaaggcgtgtc 271  Q
    ||||||||| |||||||||||||||||||||||    
T  40714957 tgtagcaccgacacctctgatcaaaggcgtgtc 40714989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 42720885 - 42720948
Alignment:
Q  274 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    ||||| ||||||||||| || | ||||||||||||||  | ||||||||||||||||| ||||||    
T  42720885 gtgtcagacactgacac-atataattacatttaattatgtgattttttcaaattattagcggtgt 42720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 47665841 - 47665899
Alignment:
Q  262 aaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaatttttt 321  Q
    ||||| |||||||||||  |||| ||||| ||||||||||||||||||||||||||||||    
T  47665841 aaggcatgtccggtgtccaacaccgacac-atgtgattacatttaattaattaatttttt 47665899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 36768844 - 36768901
Alignment:
Q  274 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattac 332  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||    
T  36768844 gtgtcggacactgacac-atgtgattacattcaattaattaattctctcaaattattac 36768901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 55258473 - 55258425
Alignment:
Q  283 actgacactatgtgattacatttaattaattaattttttcaaattattac 332  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  55258473 actgacac-atgtgattacatttaattaattagttttttcaaatttttac 55258425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 50699217 - 50699157
Alignment:
Q  292 atgtgattacatttaattaattaatttttt-caaattattaccggtgttgacttgttagtg 351  Q
    ||||||||||||| |||||| ||||||||| |||||| ||||||||||| || ||||||||    
T  50699217 atgtgattacattcaattaactaatttttttcaaatttttaccggtgttaacgtgttagtg 50699157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 6424163 - 6424254
Alignment:
Q  239 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattatta 331  Q
    ||||||||| |||  ||||||| ||||| |||  |||||||||||| ||||| |||||||| |||| |||||||| || |||| || ||||||    
T  6424163 tgtagcaccgacaattctgatcgaaggcatgtttggtgtctgacaccgacac-atgtgattgcattgaattaattcatctttttaagttatta 6424254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 5461140 - 5461222
Alignment:
Q  249 acacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattacc 333  Q
    |||||| ||||| ||||  ||||| |||||||||| |||||  ||||||||||||| |||||||| ||| | |||||||||||||    
T  5461140 acacctttgatcgaaggtatgtccagtgtctgacattgaca--atgtgattacattcaattaatttattatctcaaattattacc 5461222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 9956934 - 9956978
Alignment:
Q  239 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgaca 283  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||    
T  9956934 tgtagcaccgacgcctctgatcaaaggcatgtccggtgtctgaca 9956978  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 28341371 - 28341328
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattattaccgg 335  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||    
T  28341371 atgtgattacatttaattaattcattttctcaaactattaccgg 28341328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 327
Target Start/End: Complemental strand, 38738458 - 38738423
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaatt 327  Q
    |||||||||||||||||||||||||||| |||||||    
T  38738458 atgtgattacatttaattaattaattttctcaaatt 38738423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 894103 - 894053
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattattaccggtgttgac 342  Q
    |||||||||  || |||||||||||||||||||||| ||||| ||||||||    
T  894103 atgtgattatgttcaattaattaattttttcaaatttttaccagtgttgac 894053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 43886641 - 43886567
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgttagtggcgtgtctggtgtcc 366  Q
    |||||||||| |||||| |||| ||| | | |||||||||| ||||| ||| ||||||||  |||||||||||||    
T  43886641 atgtgattacgtttaatcaattcattatcttaaattattactggtgtcgacgtgttagtgttgtgtctggtgtcc 43886567  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 18841008 - 18841064
Alignment:
Q  274 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattatta 331  Q
    ||||||||||| |||||| ||| |||||| |||||||  |||||||||||||||||||    
T  18841008 gtgtctgacaccgacact-tgtaattacacttaattatgtaattttttcaaattatta 18841064  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 28369805 - 28369856
Alignment:
Q  279 tgacactgacactatgtgattacatttaattaattaattttttcaaattatta 331  Q
    |||||||||||| |||| |||||||||| |||||| ||||| |||||||||||    
T  28369805 tgacactgacac-atgttattacatttatttaattcattttctcaaattatta 28369856  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 41319497 - 41319550
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattattaccggtgttgacttg 345  Q
    ||||||||||||| ||||||||| ||||| |||||||||| |||| ||||||||    
T  41319497 atgtgattacattcaattaattattttttacaaattattatcggttttgacttg 41319550  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 18556021 - 18556088
Alignment:
Q  274 gtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgttgac 342  Q
    ||||||||||||||||| ||||||||||| | |||||  | ||||| | ||||||||||||||||||||    
T  18556021 gtgtctgacactgacac-atgtgattacagtcaattatgtcattttattaaattattaccggtgttgac 18556088  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 26777389 - 26777456
Alignment:
Q  292 atgtgattacatttaattaattaatttt-ttcaaattattaccggtgttgacttgttagtggcgtgtc 358  Q
    ||||||||||||| |||||| | ||||| |||||||||||| |||||||||||| | |||| ||||||    
T  26777389 atgtgattacattcaattaagtcatttttttcaaattattatcggtgttgacttctcagtgtcgtgtc 26777456  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 13810573 - 13810516
Alignment:
Q  262 aaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttt 320  Q
    ||||||||||||||||||||||| ||||| |||||||||| || ||| |||| ||||||    
T  13810573 aaggcgtgtccggtgtctgacaccgacac-atgtgattacgttcaataaattcattttt 13810516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 1118409 - 1118454
Alignment:
Q  293 tgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    |||||||||||| |||||||| ||||||||||||||| ||| ||||    
T  1118409 tgtgattacattcaattaattcattttttcaaattatcacccgtgt 1118454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 145960 - 145901
Alignment:
Q  299 tacatttaattaattaattttttcaaattattaccggtgttgacttgttagtggcgtgtc 358  Q
    |||||| |||||||| ||||| ||||| |||||||||||||||| ||| |||| ||||||    
T  145960 tacattgaattaatttattttctcaaactattaccggtgttgacatgtcagtgtcgtgtc 145901  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 34625782 - 34625735
Alignment:
Q  291 tatgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    |||||||||||||| |||||||| ||||| ||||||||||| ||||||    
T  34625782 tatgtgattacattcaattaattcattttctcaaattattatcggtgt 34625735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 11602816 - 11602858
Alignment:
Q  243 gcacccacacctctgatcaaaggcgtgtccggtgtctgacact 285  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||    
T  11602816 gcaccaacacctctgatcaaaggtgtgtccggtgtccgacact 11602858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 32577476 - 32577530
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattattaccggtgttgacttgt 346  Q
    ||||||||||||| |||||||| ||||| |||||| || |||||| |||||||||    
T  32577476 atgtgattacattcaattaattcattttctcaaatcatcaccggtcttgacttgt 32577530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 6294552 - 6294621
Alignment:
Q  296 gattacatttaattaattaattttttcaaattattaccggtgttgacttgttagtggcgtgtctggtgtc 365  Q
    |||| |||| |||||||| ||||| ||||||||||| | |||||||  ||| |||| |||||||||||||    
T  6294552 gattgcattcaattaattcattttctcaaattattatcagtgttgatgtgtgagtgccgtgtctggtgtc 6294621  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 29816969 - 29817012
Alignment:
Q  239 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgac 282  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  29816969 tgtagcaccgacacctctgatcaaagacatgtccggtgtctgac 29817012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 19045606 - 19045568
Alignment:
Q  291 tatgtgattacatttaattaattaattttttcaaattat 329  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  19045606 tatgtgattacatttaattaattcatttttttaaattat 19045568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 15086787 - 15086699
Alignment:
Q  249 acacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgt 338  Q
    |||||| |||||||| | |||||||||||| |||||  |||| |||||||||| || || ||||| | ||| ||||||||||||| ||||    
T  15086787 acacctttgatcaaatgtgtgtccggtgtccgacaccaacac-atgtgattacgttcaaataattcactttctcaaattattacccgtgt 15086699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 39219817 - 39219880
Alignment:
Q  249 acacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaatt 313  Q
    |||||||||||||||||| ||||||||||| ||||| || | |||||||||| |||  |||||||    
T  39219817 acacctctgatcaaaggcatgtccggtgtccgacacagata-tatgtgattaaattcgattaatt 39219880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 25086281 - 25086316
Alignment:
Q  296 gattacatttaattaattaattttttcaaattatta 331  Q
    ||||||||| ||||||||||||||||||||||||||    
T  25086281 gattacattcaattaattaattttttcaaattatta 25086316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 31221769 - 31221711
Alignment:
Q  281 acactgacactatgtgattacatttaattaattaattttttcaaattattaccggtgtt 339  Q
    |||||||||| |||||||||| || |||||||  ||| || ||||||||||||||||||    
T  31221769 acactgacacaatgtgattacgttaaattaatctattattccaaattattaccggtgtt 31221711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 39981665 - 39981745
Alignment:
Q  239 tgtagcacccacacctctgatcaaaggcgtgtccggtgtctgacactgacactatgtgattacatttaattaattaatttttt 321  Q
    ||||||||  ||||||||| || |||||||| |||||||| || || ||||| ||||| ||||||| ||||||||||||||||    
T  39981665 tgtagcactgacacctctgttcgaaggcgtg-ccggtgtccgaaaccgacac-atgtgcttacattaaattaattaatttttt 39981745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 10268477 - 10268537
Alignment:
Q  270 tccggtgtctgacactgacactatgtgattacatttaattaattaattttttcaaattatta 331  Q
    |||||||||||||||||||||| ||| |||||| | |||||  | |||||||||||||||||    
T  10268477 tccggtgtctgacactgacact-tgtaattacactaaattatgtgattttttcaaattatta 10268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 49636838 - 49636879
Alignment:
Q  292 atgtgattacatttaattaattaattttttcaaattattacc 333  Q
    ||||||||||||| |||||||| ||||| |||||||||||||    
T  49636838 atgtgattacattcaattaattcattttctcaaattattacc 49636879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 36302038 - 36301990
Alignment:
Q  294 gtgattacatttaattaattaattttttcaaattattaccggtgttgac 342  Q
    ||||||||||| |||||||| ||||| ||| |||||||||| |||||||    
T  36302038 gtgattacattcaattaatttattttctcacattattaccgatgttgac 36301990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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