View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_28 (Length: 484)
Name: NF1271_high_28
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 7175490 - 7175059
Alignment:
| Q |
18 |
caaatatgaggagtggagttgagtcgataagaaataaagtgagagggagaaggtaaagtagttttttgatttcattagtctctatttatcgaggtcactc |
117 |
Q |
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| T |
7175490 |
caaatatgaggagtggagttgagtcgataagaaataaagtgagagggagaaggtaaagtagttttttgatttcattcgtctctatttatcgaggtcaatc |
7175391 |
T |
|
| Q |
118 |
acagcacacttatttttcaaatcaatagaagatgcaagcggcggtgatgaagaagaattaaacaaaggcgaactcgccaaaaacagtctgtgattcataa |
217 |
Q |
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| T |
7175390 |
acagcacacttatttttcaaatcaatagaagatgcaagcggcggtgatgaagtagaattaaacaaaggcgaactc-----------tctgtgattcataa |
7175302 |
T |
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| Q |
218 |
acttggatttcattcgttgattcatccatgtgcc-----tgcgccgccacgctcacaaatgacatcgagaacaaccgtcactaagagtcggcgctcgaat |
312 |
Q |
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| T |
7175301 |
acttcgatttcattcgttgattcatccatgtgccaggcctgcgccgccacgctcacaaatggtatcgagaacaaccgtcacaaagagtcggcgctcgaat |
7175202 |
T |
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| Q |
313 |
cccactcttccattcgatcttgttgaagacattctctacaggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175201 |
cccactcttccattcgatcttgttgaagacattctctacaggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctca |
7175102 |
T |
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| Q |
413 |
tctcagattcaaatttcaccaagaagaaccttcgcgtgtcaac |
455 |
Q |
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| T |
7175101 |
tctcagattcaaatttcaccaagaagaaccttcgcgtgtcaac |
7175059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 455
Target Start/End: Complemental strand, 7161571 - 7161467
Alignment:
| Q |
351 |
caggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctcatctcagattcaaatttcaccaagaagaaccttcgcgtg |
450 |
Q |
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|||||||||||||||||||||| || | ||||| |||| |||||||||||||| ||| || ||||||||||||||| ||||||| || ||||||| |
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| T |
7161571 |
caggcttccagtcaaatccctcatgcaactcaaatcggtctgcaaatcctggaaatatcttatttcagattcaaatttcgccaagaaccactttcgcgtt |
7161472 |
T |
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| Q |
451 |
tcaac |
455 |
Q |
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||||| |
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| T |
7161471 |
tcaac |
7161467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 24722546 - 24722650
Alignment:
| Q |
312 |
tcccactcttccattcgatcttgttgaagacattctctacaggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctc |
411 |
Q |
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|||||||||||||||||||||||| ||| |||||||| |||||||| ||||| |||||| || || |||| ||||| ||| ||||||||||| || |
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| T |
24722546 |
tcccactcttccattcgatcttgtgttagaaattctctataggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatcattc |
24722645 |
T |
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| Q |
412 |
atctc |
416 |
Q |
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||||| |
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| T |
24722646 |
atctc |
24722650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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