View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_29 (Length: 479)
Name: NF1271_high_29
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 107 - 329
Target Start/End: Complemental strand, 18097438 - 18097214
Alignment:
| Q |
107 |
agcagagatcactaagaaacgaatatgatgaactgaagctacttctcacccatgaaactgccatggacgattagtagatgatgacattgacagaggagga |
206 |
Q |
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| T |
18097438 |
agcagagatcactaagaaacgaatatgatgaactgaagctacttctcacccatgaaactgccatggacgattagtagatgatgacattgacagaggagga |
18097339 |
T |
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| Q |
207 |
gtaaaagggtttcagtaaattgtgnnnnnnnnattgtagtgataatttaattaaa--annnnnnnnnnnggagagaaggtaatttaattaatattaatat |
304 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||| |
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| T |
18097338 |
gtaaaagggtttcagtaaattgtgttttttttattgtagtgataatttaatttaatttaattttttttttgagagaaggtaatttaatcaatattaatat |
18097239 |
T |
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| Q |
305 |
aaaacaagtactttttattttccct |
329 |
Q |
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||||||| ||||||||||||||||| |
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| T |
18097238 |
aaaacaactactttttattttccct |
18097214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 18097056 - 18097008
Alignment:
| Q |
338 |
tactatccatttataaaaataaatataacatggatctaccaaagcccta |
386 |
Q |
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| T |
18097056 |
tactatccatttataaaaataaatataacatggatctaccaaaccccta |
18097008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 7314127 - 7314050
Alignment:
| Q |
390 |
gttgcgaacccatagttgaatcctcgcaaaccctcaatcaggtattgctgaaact-acatgattaatttgttcactaa |
466 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7314127 |
gttgtgaacccatagttgaatcctcgcaaaccctcaatcaggtattgctgaaactaacatgattaatttgttcactaa |
7314050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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