View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_31 (Length: 477)

Name: NF1271_high_31
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_31
NF1271_high_31
[»] chr4 (41 HSPs)
chr4 (272-449)||(25042656-25042827)
chr4 (138-238)||(25042738-25042837)
chr4 (11-107)||(25042848-25042944)
chr4 (112-227)||(53261531-53261649)
chr4 (260-350)||(53261553-53261649)
chr4 (108-227)||(36876072-36876193)
chr4 (164-222)||(44570124-44570182)
chr4 (108-210)||(52650722-52650827)
chr4 (283-350)||(35153275-35153343)
chr4 (283-350)||(36876072-36876139)
chr4 (109-222)||(31262888-31263001)
chr4 (288-349)||(31262944-31263005)
chr4 (108-222)||(49795114-49795230)
chr4 (283-350)||(18939883-18939950)
chr4 (283-346)||(23136526-23136589)
chr4 (288-347)||(44570122-44570181)
chr4 (108-227)||(2063445-2063566)
chr4 (283-356)||(4391992-4392066)
chr4 (120-210)||(40252637-40252730)
chr4 (300-346)||(49795185-49795231)
chr4 (113-211)||(49951721-49951822)
chr4 (109-172)||(37060522-37060583)
chr4 (288-350)||(3179021-3179084)
chr4 (109-160)||(7852629-7852680)
chr4 (305-360)||(23016227-23016282)
chr4 (283-346)||(52650709-52650772)
chr4 (109-160)||(54700927-54700978)
chr4 (103-222)||(37461493-37461614)
chr4 (133-198)||(40173522-40173590)
chr4 (108-158)||(49532337-49532387)
chr4 (283-356)||(27963123-27963196)
chr4 (51-96)||(36488358-36488403)
chr4 (288-345)||(38354501-38354558)
chr4 (181-222)||(39767252-39767293)
chr4 (110-143)||(42197007-42197040)
chr4 (108-160)||(8297840-8297892)
chr4 (285-356)||(21687594-21687666)
chr4 (108-160)||(24175483-24175535)
chr4 (109-153)||(40480262-40480306)
chr4 (283-339)||(49951716-49951772)
chr4 (108-144)||(52373146-52373182)
[»] chr8 (34 HSPs)
chr8 (110-222)||(1876502-1876617)
chr8 (258-356)||(1876491-1876595)
chr8 (283-350)||(12002291-12002358)
chr8 (109-222)||(18842275-18842391)
chr8 (291-350)||(26014769-26014828)
chr8 (109-227)||(12002237-12002358)
chr8 (283-345)||(40628987-40629049)
chr8 (286-350)||(36907827-36907891)
chr8 (110-222)||(14016887-14017002)
chr8 (284-346)||(14016886-14016948)
chr8 (283-345)||(18842275-18842337)
chr8 (108-222)||(11533201-11533318)
chr8 (283-356)||(11533256-11533329)
chr8 (109-158)||(37564419-37564468)
chr8 (166-222)||(40628987-40629043)
chr8 (283-356)||(32271194-32271267)
chr8 (283-356)||(44220719-44220792)
chr8 (104-156)||(12639895-12639947)
chr8 (274-346)||(30486624-30486696)
chr8 (109-214)||(32271140-32271248)
chr8 (286-356)||(35501076-35501147)
chr8 (283-346)||(43841056-43841119)
chr8 (109-159)||(1773888-1773938)
chr8 (283-345)||(5218056-5218118)
chr8 (102-160)||(5687253-5687311)
chr8 (132-222)||(7627867-7627960)
chr8 (54-96)||(20996176-20996218)
chr8 (112-158)||(39594576-39594621)
chr8 (165-222)||(5218056-5218113)
chr8 (112-153)||(8108340-8108381)
chr8 (283-356)||(39594498-39594571)
chr8 (108-160)||(24869383-24869435)
chr8 (103-147)||(28207588-28207632)
chr8 (108-156)||(31264966-31265014)
[»] chr1 (41 HSPs)
chr1 (110-233)||(39973863-39973989)
chr1 (108-222)||(16113888-16114005)
chr1 (273-356)||(38172659-38172742)
chr1 (108-222)||(3047836-3047953)
chr1 (112-233)||(42573778-42573902)
chr1 (283-356)||(48947228-48947301)
chr1 (108-215)||(35543430-35543540)
chr1 (258-356)||(39973885-39973989)
chr1 (110-209)||(35259079-35259181)
chr1 (102-156)||(39912299-39912353)
chr1 (112-233)||(48947177-48947301)
chr1 (108-220)||(31042970-31043085)
chr1 (258-356)||(42573778-42573882)
chr1 (283-346)||(16113943-16114006)
chr1 (283-350)||(33791754-33791821)
chr1 (283-350)||(40286882-40286949)
chr1 (258-346)||(3047860-3047954)
chr1 (283-356)||(35259055-35259128)
chr1 (149-233)||(38172659-38172742)
chr1 (304-356)||(49478858-49478910)
chr1 (283-346)||(48905-48968)
chr1 (283-350)||(290615-290682)
chr1 (109-148)||(4851341-4851380)
chr1 (283-345)||(24034081-24034143)
chr1 (285-350)||(40053319-40053384)
chr1 (283-343)||(31043025-31043085)
chr1 (108-160)||(34861297-34861349)
chr1 (108-160)||(39150551-39150603)
chr1 (109-148)||(17112673-17112712)
chr1 (135-227)||(33791754-33791849)
chr1 (108-147)||(39914703-39914742)
chr1 (283-346)||(51904588-51904651)
chr1 (290-356)||(4040924-4040990)
chr1 (274-356)||(10355036-10355118)
chr1 (111-172)||(40341573-40341635)
chr1 (283-356)||(35543412-35543485)
chr1 (115-227)||(290864-290977)
chr1 (283-319)||(1656460-1656496)
chr1 (108-144)||(7549812-7549848)
chr1 (292-356)||(9931808-9931872)
chr1 (102-158)||(26687501-26687557)
[»] chr3 (33 HSPs)
chr3 (103-222)||(25317769-25317891)
chr3 (108-222)||(45757898-45758015)
chr3 (283-350)||(12140169-12140237)
chr3 (283-346)||(45757953-45758016)
chr3 (259-350)||(48551034-48551131)
chr3 (108-221)||(29611989-29612106)
chr3 (283-328)||(25061987-25062032)
chr3 (132-222)||(49168734-49168828)
chr3 (108-160)||(3027070-3027122)
chr3 (274-346)||(25317820-25317892)
chr3 (108-196)||(46725626-46725717)
chr3 (293-356)||(14146134-14146197)
chr3 (283-346)||(37388431-37388494)
chr3 (283-356)||(20821327-20821401)
chr3 (108-222)||(11623492-11623610)
chr3 (102-222)||(37388370-37388493)
chr3 (139-215)||(12140145-12140224)
chr3 (283-350)||(54911225-54911292)
chr3 (283-344)||(29612044-29612106)
chr3 (295-357)||(33072119-33072181)
chr3 (181-227)||(45584343-45584389)
chr3 (109-147)||(48180269-48180307)
chr3 (288-346)||(49168771-49168829)
chr3 (306-348)||(53040516-53040558)
chr3 (165-233)||(20821332-20821401)
chr3 (102-143)||(46093653-46093694)
chr3 (108-222)||(53040438-53040555)
chr3 (283-339)||(28691950-28692006)
chr3 (108-144)||(34758898-34758934)
chr3 (290-345)||(46725688-46725744)
chr3 (134-227)||(48551035-48551131)
chr3 (108-160)||(50604022-50604074)
chr3 (159-227)||(54911225-54911292)
[»] chr2 (48 HSPs)
chr2 (274-350)||(6411389-6411465)
chr2 (283-356)||(431642-431716)
chr2 (280-350)||(565707-565777)
chr2 (285-350)||(30523029-30523094)
chr2 (258-360)||(24389628-24389736)
chr2 (283-338)||(12762898-12762953)
chr2 (283-357)||(6083910-6083984)
chr2 (103-156)||(36480364-36480417)
chr2 (298-346)||(2796546-2796594)
chr2 (112-233)||(6334681-6334805)
chr2 (283-355)||(8086979-8087051)
chr2 (108-237)||(24389628-24389760)
chr2 (283-350)||(9049165-9049232)
chr2 (283-350)||(33068558-33068625)
chr2 (283-349)||(12848488-12848554)
chr2 (109-233)||(431642-431770)
chr2 (283-356)||(6334681-6334754)
chr2 (110-191)||(30869613-30869695)
chr2 (283-350)||(33634813-33634880)
chr2 (108-227)||(565707-565830)
chr2 (286-356)||(3191187-3191257)
chr2 (108-158)||(3882585-3882635)
chr2 (304-350)||(15806055-15806101)
chr2 (258-334)||(30869593-30869673)
chr2 (108-153)||(5962057-5962102)
chr2 (293-350)||(32066756-32066813)
chr2 (283-356)||(42342499-42342571)
chr2 (291-356)||(43678560-43678625)
chr2 (139-227)||(9049165-9049256)
chr2 (168-215)||(12762898-12762945)
chr2 (108-156)||(18684329-18684379)
chr2 (283-350)||(25626972-25627039)
chr2 (109-160)||(29685789-29685840)
chr2 (135-227)||(33454964-33455059)
chr2 (283-350)||(33454992-33455059)
chr2 (165-227)||(30523032-30523094)
chr2 (165-222)||(3666458-3666515)
chr2 (109-227)||(6411389-6411510)
chr2 (283-344)||(8964416-8964477)
chr2 (170-227)||(32066756-32066813)
chr2 (134-234)||(6083910-6084013)
chr2 (108-160)||(15816789-15816841)
chr2 (108-144)||(20683098-20683134)
chr2 (108-144)||(24762815-24762851)
chr2 (108-156)||(32859754-32859802)
chr2 (108-222)||(37313689-37313804)
chr2 (57-97)||(37468290-37468330)
chr2 (274-346)||(44838631-44838703)
[»] chr5 (26 HSPs)
chr5 (108-227)||(25437889-25438012)
chr5 (283-356)||(21259427-21259500)
chr5 (283-346)||(36609150-36609213)
chr5 (132-214)||(4695065-4695150)
chr5 (299-356)||(26432302-26432359)
chr5 (274-350)||(10228333-10228409)
chr5 (288-356)||(16636672-16636740)
chr5 (283-346)||(28639576-28639640)
chr5 (283-346)||(4695096-4695159)
chr5 (279-350)||(26686667-26686738)
chr5 (279-350)||(26956398-26956469)
chr5 (108-196)||(10410419-10410510)
chr5 (165-233)||(21259427-21259495)
chr5 (155-227)||(26686667-26686738)
chr5 (155-227)||(26956398-26956469)
chr5 (283-346)||(14309106-14309169)
chr5 (290-344)||(12448702-12448756)
chr5 (283-345)||(26453661-26453723)
chr5 (283-356)||(22601799-22601872)
chr5 (283-356)||(27325833-27325906)
chr5 (283-356)||(27794868-27794941)
chr5 (57-106)||(33958292-33958341)
chr5 (67-100)||(35634878-35634911)
chr5 (283-356)||(38594940-38595013)
chr5 (108-152)||(23023602-23023646)
chr5 (108-160)||(34032175-34032227)
[»] chr7 (31 HSPs)
chr7 (283-356)||(8237974-8238047)
chr7 (102-227)||(34299758-34299886)
chr7 (283-350)||(34299758-34299825)
chr7 (283-350)||(19620016-19620083)
chr7 (283-356)||(43492210-43492284)
chr7 (283-356)||(24610847-24610920)
chr7 (134-233)||(43492210-43492313)
chr7 (109-152)||(9097787-9097830)
chr7 (283-334)||(10453488-10453539)
chr7 (300-350)||(32699397-32699447)
chr7 (108-222)||(5907794-5907909)
chr7 (274-346)||(3267629-3267701)
chr7 (274-346)||(26871786-26871858)
chr7 (110-233)||(8237922-8238047)
chr7 (283-350)||(24299146-24299213)
chr7 (108-147)||(28770446-28770485)
chr7 (105-156)||(35599891-35599942)
chr7 (283-350)||(39316308-39316375)
chr7 (109-222)||(44452061-44452176)
chr7 (283-356)||(7432660-7432734)
chr7 (165-211)||(10453493-10453539)
chr7 (110-215)||(31498656-31498764)
chr7 (108-222)||(3267630-3267747)
chr7 (102-147)||(17302854-17302899)
chr7 (164-220)||(85720-85776)
chr7 (108-160)||(27123243-27123295)
chr7 (103-155)||(27766776-27766828)
chr7 (108-156)||(36973305-36973353)
chr7 (108-160)||(43234759-43234811)
chr7 (112-152)||(43996326-43996366)
chr7 (283-346)||(44452060-44452124)
[»] scaffold0010 (2 HSPs)
scaffold0010 (258-350)||(26694-26792)
scaffold0010 (134-215)||(26696-26780)
[»] scaffold0236 (2 HSPs)
scaffold0236 (283-356)||(19591-19664)
scaffold0236 (165-233)||(19596-19664)
[»] chr6 (12 HSPs)
chr6 (285-356)||(23344597-23344669)
chr6 (279-346)||(13445750-13445817)
chr6 (108-222)||(13445751-13445868)
chr6 (283-346)||(10364767-10364830)
chr6 (115-233)||(29716773-29716895)
chr6 (283-356)||(29716773-29716847)
chr6 (57-106)||(2242054-2242103)
chr6 (108-145)||(3605116-3605153)
chr6 (110-146)||(2424391-2424427)
chr6 (112-160)||(30739572-30739620)
chr6 (283-319)||(34552369-34552405)
chr6 (108-144)||(35229261-35229297)
[»] scaffold0027 (2 HSPs)
scaffold0027 (283-356)||(13344-13417)
scaffold0027 (165-233)||(13344-13412)
[»] scaffold0201 (1 HSPs)
scaffold0201 (58-96)||(8472-8510)
[»] scaffold0246 (1 HSPs)
scaffold0246 (109-153)||(18201-18245)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 272 - 449
Target Start/End: Complemental strand, 25042827 - 25042656
Alignment:
Q  272 gctaaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacatttccctgtnnnnnnnnn 371  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||               
T  25042827 gctaaattaagtattctttaaaaatgttaaaattttcaatttctaatgtactgattacacaaacttttataaaaagttaacatttccct------tataa 25042734  T
Q  372 nnnncaatcttgaaaaatcttcaaagttatttatgcatggggtatatgggtaaatgacaatatatacattttgttatt 449  Q
         || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25042733 aaaaaaaacttgaaaaatcttcaaagctatttatgcatggggtatatgggtaaatgacaatatatacattttgttatt 25042656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 25042837 - 25042738
Alignment:
Q  138 ctttaagcatgctaaattaagtattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgttaacatttccct 237  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| |||||||||||||||| |||||| ||||||||||||||    
T  25042837 ctttaagcatgctaaattaagtattcttt-aaaaatgttaaaattttcaatttctaatgtactgattacacaaacttttataaaaagttaacatttccct 25042739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 25042944 - 25042848
Alignment:
Q  11 cagagagagcattatgacatagtataaacatgagagggttttgttccaaaaattgttcaaaaatgatttttcaaatatcatttctcctttcaaaaat 107  Q
    ||||||||| |||| ||||||||||||||||||||| |  ||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  25042944 cagagagagaattaggacatagtataaacatgagagagagttgttccaaaaattgttcaaaaatagttttttaaatatcatttctcctttcaaaaat 25042848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 53261531 - 53261649
Alignment:
Q  112 ttgttaacgagtgccttcgggacactctttaagcatgctaaattaagt-attct--tttaaaaatgttaaaatttttaatttccaatgtattgattacac 208  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||| ||| |  ||||||||| | ||| |||| ||||||||||| | |||||||||    
T  53261531 ttgttaacgagtgcccccaggacactctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatgcagtgattacac 53261630  T
Q  209 aaactttaataaaacgtta 227  Q
    ||||||| |||||| ||||    
T  53261631 aaacttttataaaaagtta 53261649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 260 - 350
Target Start/End: Original strand, 53261553 - 53261649
Alignment:
Q  260 cactctttaagc--gctaaattaagta----ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||||||||||  |||||||||||||    |||||||||||| | ||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  53261553 cactctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatgcagtgattacacaaacttttataaaaagtta 53261649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 36876193 - 36876072
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta----ttcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    |||||||||||||||||| | | ||| | ||||||||||||||||||||||||    ||||||||||| ||| ||  |||| ||||||||||  ||||||    
T  36876193 ggtcttgttaacgagtgc-tcccggatattctttaagcatgctaaattaagtaactattcttttaaaa-tgtaaatgttttcaatttccaatacattgat 36876096  T
Q  204 tacacaaactttaataaaacgtta 227  Q
    |||||||||||| |||||| ||||    
T  36876095 tacacaaacttttataaaaagtta 36876072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 44570182 - 44570124
Alignment:
Q  164 ttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaa 222  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||    
T  44570182 ttttaaaaatgttaaattttttaattttcaatgcattgattacacaaactttcataaaa 44570124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 52650827 - 52650722
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||||||||    ||||| |||| |||||| |||||||| ||||| ||||  | ||||    
T  52650827 ggtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattc-tttacaaatgtcaaaattttcaattttcaattcactgat 52650729  T
Q  204 tacacaa 210  Q
    |||||||    
T  52650728 tacacaa 52650722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 35153275 - 35153343
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||||||||| |||||||||| ||||| || | ||| ||||||||||||||||||||||    
T  35153275 tattctttaaaaatgttaaagttttcaattttcaatgcactttattgcacaaacttttataaaaagtta 35153343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 36876139 - 36876072
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||| ||||||| ||  |||||||||||||||  | ||||||||||||||||||||||||||||    
T  36876139 tattcttttaaaatgtaaatgttttcaatttccaatacattgattacacaaacttttataaaaagtta 36876072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 31262888 - 31263001
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta--ttcttttaaaaatgttaaaatttttaatttccaatgtattgattac 206  Q
    ||||||||||||||||||| | |  |||||||||||||| ||||||||||||  |  |||||||||||| ||| ||||  ||||  |||||| ||| |||    
T  31262888 gtcttgttaacgagtgcctcctg--cactctttaagcattctaaattaagtaattatttttaaaaatgtcaaagttttcgattttgaatgtactgactac 31262985  T
Q  207 acaaactttaataaaa 222  Q
    ||||||||| ||||||    
T  31262986 acaaacttttataaaa 31263001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 31262944 - 31263005
Alignment:
Q  288 tttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtt 349  Q
    ||||||||||| ||| ||||| ||||  |||||||||| |||||||||||||||||||||||    
T  31262944 tttaaaaatgtcaaagttttcgattttgaatgtactgactacacaaacttttataaaaagtt 31263005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 49795114 - 49795230
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta--ttcttttaaaaatgttaaaatttttaatttccaatgtattgatta 205  Q
    ||||||||||||||||||| | ||| |||||||||||||| |||||| |||||  |  ||||  |||| | |||||||| ||||| ||||| |  |||||    
T  49795114 ggtcttgttaacgagtgccctgggggcactctttaagcatactaaataaagtaattatttttttaaatttaaaaattttcaattttcaatgcaccgatta 49795213  T
Q  206 cacaaactttaataaaa 222  Q
    |||||||||| ||||||    
T  49795214 cacaaacttttataaaa 49795230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 18939950 - 18939883
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||  ||||||||||||||||  |||||| |  || ||||||||||||||||||||||    
T  18939950 tattctttaaaaaaattaaaattttcaatttttaatgtatttgttgcacaaacttttataaaaagtta 18939883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 23136589 - 23136526
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||| ||||| | ||| |||||||||||||||| ||||||||||||| |||||| |||||    
T  23136589 tattcttttaaaatttaaaagttttcaatttccaatgcactgattacacaatcttttacaaaaa 23136526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 44570181 - 44570122
Alignment:
Q  288 tttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaag 347  Q
    ||||||||||||||| |||| ||||| ||||| | |||||||||||||||| ||||||||    
T  44570181 tttaaaaatgttaaattttttaattttcaatgcattgattacacaaactttcataaaaag 44570122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 2063445 - 2063566
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||| |    ||||| |||||||| || |||   || ||||||||||||||| |     
T  2063445 ggtcttgttaacgagtgc-tcccggacactctttaagcatgctaaattaggaagttattc-tttaaaaaagtcaaacagttcaatttccaatgtattaaa 2063542  T
Q  204 tacacaaactttaataaaacgtta 227  Q
    |||||||| ||| |||||| ||||    
T  2063543 tacacaaattttcataaaaagtta 2063566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 4391992 - 4392066
Alignment:
Q  283 tattctttaaaaatgttaaaat-tttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||||||||||| ||||  ||||||||| ||||  |||||||||||||| ||||||||||| ||| |||||    
T  4391992 tattctttaaaaatgtcaaaaaatttcaattttcaatacactgattacacaaatttttataaaaatttatcattt 4392066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 40252637 - 40252730
Alignment:
Q  120 gagtgccttcgggacactctttaagcatgctaaattaagta-ttctt--ttaaaaatgttaaaatttttaatttccaatgtattgattacacaa 210  Q
    ||||| |||||||||||||||||| |||  ||||||||||| || ||  |||||||||||||| |||| ||||| ||||  |||||||||||||    
T  40252637 gagtgtcttcgggacactctttaaacatattaaattaagtaattgttatttaaaaatgttaaagttttcaattttcaatacattgattacacaa 40252730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 49795185 - 49795231
Alignment:
Q  300 aaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||| ||||| || |||||||||||||||||||||||    
T  49795185 aaaattttcaattttcaatgcaccgattacacaaacttttataaaaa 49795231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 49951822 - 49951721
Alignment:
Q  113 tgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgattacac 208  Q
    ||||||| |||||| |||||  ||||||||||||||||||||||||    ||||||||| ||||||| ||| |||| ||||| ||||| |  ||||||||    
T  49951822 tgttaactagtgccctcggggtactctttaagcatgctaaattaagtaattattctttt-aaaatgtcaaagttttcaattttcaatgcaccgattacac 49951724  T
Q  209 aaa 211  Q
    |||    
T  49951723 aaa 49951721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 37060522 - 37060583
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagtattcttttaaaaa 172  Q
    ||||||||||||||||||| || |||  ||||||||||| | ||||| ||||||||||||||||    
T  37060522 gtcttgttaacgagtgcctccgagac--tctttaagcatcccaaatttagtattcttttaaaaa 37060583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 3179084 - 3179021
Alignment:
Q  288 tttaaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaaaagtta 350  Q
    |||||||| |||||| |||||||||||||||  || | |||||||||||||| |||||||||||    
T  3179084 tttaaaaaagttaaagttttcaatttccaatacactttattacacaaactttcataaaaagtta 3179021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 7852680 - 7852629
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||| ||||||||||| ||||| |||||||||||||||| ||||||| ||||    
T  7852680 gtctcgttaacgagtgtcttcgagacactctttaagcatcctaaatttagta 7852629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 23016282 - 23016227
Alignment:
Q  305 tttcaatttccaatgtactgattacacaaacttttataaaaagttaacatttccct 360  Q
    ||||||||||||||| | ||| |||| | ||||||||||||| |||||||||||||    
T  23016282 tttcaatttccaatgcattgaatacatagacttttataaaaacttaacatttccct 23016227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 52650772 - 52650709
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    ||||||||| |||||| |||||||||||||| ||||  |||||||||||||  ||| |||||||    
T  52650772 tattctttacaaatgtcaaaattttcaattttcaattcactgattacacaatttttcataaaaa 52650709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 54700978 - 54700927
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||||||||||||||| | ||||||||||||||||||||  |||| ||||||    
T  54700978 gtcttgttaacgagtgtcatcgggacactctttaagcattttaaaataagta 54700927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 37461614 - 37461493
Alignment:
Q  103 aaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta--ttcttttaaaaatgttaaaatttttaatttccaatgtatt 200  Q
    ||||||||||||||||||| ||  | || | |||||||||| ||||||||||||||||  |   ||| ||||||| ||| |||| |||||  |||| |      
T  37461614 aaaatggtcttgttaacgaatgaatccgaggcactctttaaacatgctaaattaagtaattaaattttaaaatgtcaaagttttcaatttttaatgcacc 37461515  T
Q  201 gattacacaaactttaataaaa 222  Q
    ||||||||||||||| ||||||    
T  37461514 gattacacaaactttcataaaa 37461493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 40173590 - 40173522
Alignment:
Q  133 acactctttaagcatgctaaattaagtattcttt---taaaaatgttaaaatttttaatttccaatgta 198  Q
    ||||||||||| ||| |||||||||||| || ||   ||||||||||||| |||||||||| |||||||    
T  40173590 acactctttaaacattctaaattaagtaatcattcattaaaaatgttaaagtttttaattttcaatgta 40173522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 49532387 - 49532337
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag 158  Q
    |||||||||||||||||||  ||||||||||| ||||||| | ||||||||    
T  49532387 ggtcttgttaacgagtgcccccgggacactctgtaagcattccaaattaag 49532337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 27963196 - 27963123
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||| ||||| |||||||||||||||| ||||  ||| |||| ||||||||  ||||||| ||| |||||    
T  27963196 tattcttttaaaatattaaaattttcaattttcaatacactaattatacaaacttccataaaaatttatcattt 27963123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 36488403 - 36488358
Alignment:
Q  51 ttgttccaaaaattgttcaaaaatgatttttcaaatatcatttctc 96  Q
    |||| ||||||||||| ||||||| ||| |||||||||||||||||    
T  36488403 ttgtcccaaaaattgtacaaaaataattgttcaaatatcatttctc 36488358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 38354558 - 38354501
Alignment:
Q  288 tttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaa 345  Q
    ||||||||||| ||| ||||||||||| |||  ||||||||||| |||||| ||||||    
T  38354558 tttaaaaatgtcaaacttttcaatttctaatacactgattacactaactttaataaaa 38354501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 39767252 - 39767293
Alignment:
Q  181 tttttaatttccaatgtattgattacacaaactttaataaaa 222  Q
    |||||||||||||||| ||| |||||||||||||| ||||||    
T  39767252 tttttaatttccaatgcattaattacacaaacttttataaaa 39767293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 42197007 - 42197040
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaa 143  Q
    |||||||||||||||||||||| |||||||||||    
T  42197007 tcttgttaacgagtgccttcggaacactctttaa 42197040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 8297840 - 8297892
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||||||||||||||||||  |||| |||||||||||||| | ||||| ||||    
T  8297840 ggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagta 8297892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 21687666 - 21687594
Alignment:
Q  285 ttctttaaaaatgttaaaattttcaatttccaatgtactg-attacacaaacttttataaaaagttaacattt 356  Q
    |||||||| ||| | ||| | |||||||| ||||| |||  |||||||||||||||||||||||||| |||||    
T  21687666 ttctttaataatatcaaagtgttcaattttcaatgcactttattacacaaacttttataaaaagttaccattt 21687594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 24175535 - 24175483
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    ||||||||||||||||| | |  ||||||||||||||||| ||||||| ||||    
T  24175535 ggtcttgttaacgagtgtccttaggacactctttaagcatcctaaatttagta 24175483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 40480306 - 40480262
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaa 153  Q
    ||||||| |||||||||||  ||||||||||||||| ||||||||    
T  40480306 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaa 40480262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 49951772 - 49951716
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaactttt 339  Q
    |||||||| ||||||| ||| |||||||||| ||||| || ||||||||||| ||||    
T  49951772 tattcttttaaaatgtcaaagttttcaattttcaatgcaccgattacacaaattttt 49951716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 52373182 - 52373146
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaag 144  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  52373182 ggtcttgttaacgagtacctccgggacactctttaag 52373146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 1876617 - 1876502
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgatta 205  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||||    ||||||||| ||||||| |||||||| ||||||||||| | ||||||    
T  1876617 tcttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattctttt-aaaatgtcaaaattttcaatttccaatgcactgatta 1876519  T
Q  206 cacaaactttaataaaa 222  Q
    |||||||||| ||||||    
T  1876518 cacaaactttcataaaa 1876502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 356
Target Start/End: Complemental strand, 1876595 - 1876491
Alignment:
Q  258 ggcactctttaagc--gctaaattaagta----ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaa 351  Q
    ||||||||||||||  |||||||||||||    |||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |||     
T  1876595 ggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcactgattacacaaactttcataaaaaattac 1876496  T
Q  352 cattt 356  Q
    |||||    
T  1876495 cattt 1876491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 12002291 - 12002358
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||||||    
T  12002291 tattctttaaaaatgtaaaagttttcaatttccaatgcactgattacacaaatttttataaaaagtta 12002358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 18842391 - 18842275
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta-ttctt--ttaaaaatgttaaaatttttaatttccaatgtattgatta 205  Q
    |||| ||||||||||||| |||||| ||||||||| |||  ||||||||||| || ||  |||||||||| ||| ||||||||||  |||||||||||||    
T  18842391 gtctcgttaacgagtgccctcgggatactctttaaccattttaaattaagtaattattctttaaaaatgtcaaagtttttaatttttaatgtattgatta 18842292  T
Q  206 cacaaactttaataaaa 222  Q
    |||||||||| ||||||    
T  18842291 cacaaacttttataaaa 18842275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 26014828 - 26014769
Alignment:
Q  291 aaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  26014828 aaaaatgttaatattttcaagttccaatgcactgattacacaaacatttataaaaagtta 26014769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 12002237 - 12002358
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta-ttctt--ttaaaaatgttaaaatttttaatttccaatgtattgatta 205  Q
    |||||||||||||||  | ||||| ||||||||||| || |||||||||||| || ||  |||||||||| ||| |||| ||||||||||| | ||||||    
T  12002237 gtcttgttaacgagtatcctcggggcactctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgcactgatta 12002336  T
Q  206 cacaaactttaataaaacgtta 227  Q
    |||||| ||| |||||| ||||    
T  12002337 cacaaatttttataaaaagtta 12002358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 40629049 - 40628987
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaa 345  Q
    ||||| |||||||||||||| |||| ||||||||||  |||||||||||||||||||||||||    
T  40629049 tattcattaaaaatgttaaagtttttaatttccaattcactgattacacaaacttttataaaa 40628987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 36907827 - 36907891
Alignment:
Q  286 tctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||| ||||| | ||| |||||||||||||||| | ||||||||||||||||||||||||||||    
T  36907827 tctttcaaaatttaaaagttttcaatttccaatgcaatgattacacaaacttttataaaaagtta 36907891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 14017002 - 14016887
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagt----attcttttaaaaatgttaaaatttttaatttccaatgtattgatta 205  Q
    |||||||||| ||||||| |||| ||||||||||||||||||||| ||||    |||| ||| ||||| | ||| |||| ||||||||||| | |||| |    
T  14017002 tcttgttaactagtgcctccggggcactctttaagcatgctaaataaagtaatgattc-tttcaaaatttaaaagttttcaatttccaatgcactgatca 14016904  T
Q  206 cacaaactttaataaaa 222  Q
    |||||||||| ||||||    
T  14016903 cacaaacttttataaaa 14016887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 14016948 - 14016886
Alignment:
Q  284 attctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    ||||||| ||||| | ||| |||||||||||||||| |||||| |||||||||||||||||||    
T  14016948 attctttcaaaatttaaaagttttcaatttccaatgcactgatcacacaaacttttataaaaa 14016886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 18842337 - 18842275
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaa 345  Q
    |||||||||||||||| ||| |||| |||||  |||||| |||||||||||||||||||||||    
T  18842337 tattctttaaaaatgtcaaagtttttaatttttaatgtattgattacacaaacttttataaaa 18842275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 11533201 - 11533318
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatt----aagtattcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||||    || ||||| ||||||||||| ||| |||| ||||||||||| | |||     
T  11533201 ggtcttgttaacgagtgttttcgggacactctttaaacatgttaaattaataaattattc-tttaaaaatgtcaaagttttcaatttccaatgcactgaa 11533299  T
Q  204 tacacaaactttaataaaa 222  Q
      |||||||||| ||||||    
T  11533300 ggcacaaactttcataaaa 11533318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 11533256 - 11533329
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||||||||||| ||| |||||||||||||||| |||||   |||||||||| ||||||| ||| |||||    
T  11533256 tattctttaaaaatgtcaaagttttcaatttccaatgcactgaaggcacaaactttcataaaaaattaccattt 11533329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 37564468 - 37564419
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag 158  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaag 37564419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 40629043 - 40628987
Alignment:
Q  166 ttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaa 222  Q
    |||||||||||||| |||||||||||||||  | |||||||||||||||| ||||||    
T  40629043 ttaaaaatgttaaagtttttaatttccaattcactgattacacaaacttttataaaa 40628987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 32271194 - 32271267
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||||||||||||||| ||||||||||| |||  | |||||||||||||||  |||||||| || |||||    
T  32271194 tattttttaaaaatgttaaagttttcaatttctaattcattgattacacaaacttccataaaaagataccattt 32271267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 44220792 - 44220719
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||| ||||||| ||| |||||||||||||||| ||| ||||||||||| |  ||||||| ||| |||||    
T  44220792 tattcttttaaaatgtcaaagttttcaatttccaatgcactcattacacaaacgtccataaaaatttaccattt 44220719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 12639895 - 12639947
Alignment:
Q  104 aaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta 156  Q
    |||| ||||||||||||||||||| ||| ||||| ||||||||| ||||||||    
T  12639895 aaatagtcttgttaacgagtgcctccggaacactttttaagcattctaaatta 12639947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 30486624 - 30486696
Alignment:
Q  274 taaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||| ||| |||||||| ||||| | ||| |||| |||||  |||| ||||||||||||||||||||||||||    
T  30486624 taaagtaattattcttttaaaatttaaaagtttttaatttataatgcactgattacacaaacttttataaaaa 30486696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 32271140 - 32271248
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgatt 204  Q
    ||||||||| |||||  |||||||| | | |||||||||  |||||||||    |||| |||||||||||||||| |||| |||||| |||  |||||||    
T  32271140 gtcttgttatcgagtatcttcgggatattttttaagcattttaaattaagaaattatt-ttttaaaaatgttaaagttttcaatttctaattcattgatt 32271238  T
Q  205 acacaaactt 214  Q
    ||||||||||    
T  32271239 acacaaactt 32271248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 35501147 - 35501076
Alignment:
Q  286 tctttaaaaatgttaaaattttcaatttccaatgtactg-attacacaaacttttataaaaagttaacattt 356  Q
    ||||| ||||| ||||| |||| ||||||||||| |||  |||||||||||||||||||||| |||| ||||    
T  35501147 tctttgaaaatattaaagtttttaatttccaatgcactttattacacaaacttttataaaaatttaatattt 35501076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 43841056 - 43841119
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||| ||||| ||||||||||  ||| || |||||||||||| ||||| |||||    
T  43841056 tattctttaaaaatattaaatttttcaatttttaatatattgattacacaaatttttacaaaaa 43841119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 1773938 - 1773888
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagt 159  Q
    ||||||||||||||||||| |||| || ||||||||| | |||||||||||    
T  1773938 gtcttgttaacgagtgcctccggggcagtctttaagctttctaaattaagt 1773888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 5218118 - 5218056
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaa 345  Q
    ||||||||||||||||||||||||| ||||| ||||| |   |||| ||||||||| ||||||    
T  5218118 tattctttaaaaatgttaaaatttttaattttcaatgcagaaattatacaaactttcataaaa 5218056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 5687253 - 5687311
Alignment:
Q  102 aaaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    ||||| ||||||||||||||||| |  ||| |||||||||||||||  |||||||||||    
T  5687253 aaaaagggtcttgttaacgagtgtccccggtacactctttaagcattgtaaattaagta 5687311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 7627960 - 7627867
Alignment:
Q  132 gacactctttaagcatgctaaattaagta-ttctttt--aaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaa 222  Q
    |||||||||||| |||| ||||||||||| || ||||  |||||||| ||| ||||||||||| |||  | |||| ||||||||||| ||||||    
T  7627960 gacactctttaaacatgttaaattaagtaattatttttaaaaaatgtgaaagtttttaatttctaatacactgatcacacaaactttcataaaa 7627867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 20996176 - 20996218
Alignment:
Q  54 ttccaaaaattgttcaaaaatgatttttcaaatatcatttctc 96  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  20996176 ttccaaaagttgttcaaaaatgattgtacaaatatcatttctc 20996218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 39594621 - 39594576
Alignment:
Q  112 ttgttaacgagtgccttcgggacactctttaagcatgctaaattaag 158  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||    
T  39594621 ttgttaacgagtgcct-cggaacactctttaagaatgctaaattaag 39594576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 5218113 - 5218056
Alignment:
Q  165 tttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaa 222  Q
    |||||||||||||||||||||||||| ||||| |   |||| ||||||||| ||||||    
T  5218113 tttaaaaatgttaaaatttttaattttcaatgcagaaattatacaaactttcataaaa 5218056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 8108381 - 8108340
Alignment:
Q  112 ttgttaacgagtgccttcgggacactctttaagcatgctaaa 153  Q
    |||||||||||||| |||||| |||||||||||||| |||||    
T  8108381 ttgttaacgagtgcattcggggcactctttaagcattctaaa 8108340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 39594571 - 39594498
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||||| |||| | ||| |||||||||| || |  |||||||| ||||||||| ||||||||||| |||||    
T  39594571 tattctttataaatatcaaagttttcaattttcattacactgattatacaaactttcataaaaagttatcattt 39594498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 24869383 - 24869435
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||||||||||||||||||   | | |||||||||| ||||||||||||||||    
T  24869383 ggtcttgttaacgagtgcccctgtggcactctttaaacatgctaaattaagta 24869435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 28207588 - 28207632
Alignment:
Q  103 aaaatggtcttgttaacgagtgccttcgggacactctttaagcat 147  Q
    |||| |||||||||||||||||||  || ||||||||||||||||    
T  28207588 aaaagggtcttgttaacgagtgcccccgagacactctttaagcat 28207632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 31264966 - 31265014
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta 156  Q
    |||||||||||||||||||   | | |||||||||||||||||||||||    
T  31264966 ggtcttgttaacgagtgcccctgtggcactctttaagcatgctaaatta 31265014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 39973863 - 39973989
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgatta 205  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||||    ||||||||| ||||||||||| |||| ||||| ||||| ||||||||    
T  39973863 tcttgttaacgagtgtctccggggcactctttaagcatgctaaattaagtaattattctttt-aaaatgttaaagttttcaattttcaatgcattgatta 39973961  T
Q  206 cacaaactttaataaaacgttaacattt 233  Q
     ||||||||| |||||| |||| |||||    
T  39973962 tacaaactttcataaaaagttatcattt 39973989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 16113888 - 16114005
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta---ttcttttaaaaatgttaaaatttttaatttccaatgtattgatt 204  Q
    |||||||||||||||||||| |||| |||||||||||||| ||| ||||||||    | |||| ||||||| ||| |||| ||||||||||| | |||||    
T  16113888 ggtcttgttaacgagtgcctccggggcactctttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaatttccaatgcactgatt 16113987  T
Q  205 acacaaactttaataaaa 222  Q
    ||||||||||| ||||||    
T  16113988 acacaaactttcataaaa 16114005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 356
Target Start/End: Original strand, 38172659 - 38172742
Alignment:
Q  273 ctaaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||||| |||||||||||||||| ||| |||| |||||  |||| |||||||||||||||||||||||||||||| |||||    
T  38172659 ctaaattaattattctttaaaaatgtaaaagtttttaatttttaatgcactgattacacaaacttttataaaaagttatcattt 38172742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 3047836 - 3047953
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagt-attct--tttaaaaatgttaaaatttttaatttccaatgtattgatt 204  Q
    ||||||||||| |||||||  |||| |||||||||||||||||||||||||| ||| |  ||||||||||| ||| ||||  |||||||||| |||||||    
T  3047836 ggtcttgttaaagagtgcccccggggcactctttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgatttccaatgcattgatt 3047935  T
Q  205 acacaaactttaataaaa 222  Q
    | ||||||||| ||||||    
T  3047936 aaacaaactttcataaaa 3047953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 42573902 - 42573778
Alignment:
Q  112 ttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgattaca 207  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||||    ||||||||| ||||||||||  |||| ||||| ||||| | |||||| |    
T  42573902 ttgttaacaagtgcctccggggcactctttaagcatgctaaattaagtaattattctttt-aaaatgttaaggttttcaattttcaatgcactgattata 42573804  T
Q  208 caaactttaataaaacgttaacattt 233  Q
    ||||||| ||||||| |||| |||||    
T  42573803 caaacttcaataaaaagttaccattt 42573778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 48947228 - 48947301
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||||||||||| ||| |||||||||||||||| |||||||||||||| ||| ||||||||||| |||||    
T  48947228 tattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccattt 48947301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 35543540 - 35543430
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta---ttcttttaaaaatgttaaaatttttaatttccaatgtattgatt 204  Q
    ||||||||||||||||||||| ||  |||| ||||||||||||||||||||||    | |||| ||||| | ||| |||| |||||||||| |||| |||    
T  35543540 ggtcttgttaacgagtgcctttggagcactatttaagcatgctaaattaagtaattatttttttaaaatatcaaagttttcaatttccaatatattaatt 35543441  T
Q  205 acacaaacttt 215  Q
    |||||||||||    
T  35543440 acacaaacttt 35543430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 356
Target Start/End: Original strand, 39973885 - 39973989
Alignment:
Q  258 ggcactctttaagc--gctaaattaagta----ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaa 351  Q
    ||||||||||||||  |||||||||||||    |||||| ||||||||||| |||||||||| ||||| | |||||| ||||||||| |||||||||||     
T  39973885 ggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattttcaatgcattgattatacaaactttcataaaaagttat 39973984  T
Q  352 cattt 356  Q
    |||||    
T  39973985 cattt 39973989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 35259181 - 35259079
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgatta 205  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||    |||| |||||||||||| ||| |||| |||||||||||   ||||||    
T  35259181 tcttgttaacgagtgccctcggggcactctttaagtatgctaaattaagaaattatt-ttttaaaaatgtaaaagttttcaatttccaatgcgctgatta 35259083  T
Q  206 caca 209  Q
    ||||    
T  35259082 caca 35259079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 39912353 - 39912299
Alignment:
Q  102 aaaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta 156  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  39912353 aaaaagggtcttgttaacgagtgcccccgggacactctttaagcatgctaaatta 39912299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 48947177 - 48947301
Alignment:
Q  112 ttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta---ttcttttaaaaatgttaaaatttttaatttccaatgtattgattacac 208  Q
    |||||||||||||||   ||| || ||||||||||| ||||||||||||    | |||||||||||| ||| |||| ||||||||||| | |||||||||    
T  48947177 ttgttaacgagtgcccctggggcattctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacac 48947276  T
Q  209 aaactttaataaaacgttaacattt 233  Q
    ||| ||| |||||| |||| |||||    
T  48947277 aaattttcataaaaagttaccattt 48947301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 31042970 - 31043085
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta---ttcttttaaaaatgttaaaatttttaatttccaatgtattgatt 204  Q
    |||||||||||||| || |  ||| ||| ||||||||||| ||||||||||||    | |||||||||||| ||| |||| ||||| ||||| |||||||    
T  31042970 ggtcttgttaacgaatgtccccggcacagtctttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattttcaatgcattgatt 31043069  T
Q  205 acacaaactttaataa 220  Q
    ||||||||||| ||||    
T  31043070 acacaaactttcataa 31043085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 356
Target Start/End: Complemental strand, 42573882 - 42573778
Alignment:
Q  258 ggcactctttaagc--gctaaattaagta----ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaa 351  Q
    ||||||||||||||  |||||||||||||    |||||| ||||||||||  |||||||||| ||||| |||||||| ||||||||  |||||||||||     
T  42573882 ggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaggttttcaattttcaatgcactgattatacaaacttcaataaaaagttac 42573783  T
Q  352 cattt 356  Q
    |||||    
T  42573782 cattt 42573778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 16113943 - 16114006
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||| ||| ||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||    
T  16113943 tattttttcaaaatgtcaaagttttcaatttccaatgcactgattacacaaactttcataaaaa 16114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 33791821 - 33791754
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||| ||||||| ||| |||||||||||||||  || ||||||||||||||| |||||||||||    
T  33791821 tattcttttaaaatgtcaaatttttcaatttccaatacaccgattacacaaactttcataaaaagtta 33791754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 40286882 - 40286949
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||| |||||   ||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  40286882 tattctttcaaaattaaaaagttttcaatttccaatgcactgagtacacaaacttttataaaaagtta 40286949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 3047860 - 3047954
Alignment:
Q  258 ggcactctttaagc--gctaaattaagta----ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    ||||||||||||||  |||||||||||||    |||||||||||||| ||| ||||| |||||||||| | |||||| ||||||||| |||||||    
T  3047860 ggcactctttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgatttccaatgcattgattaaacaaactttcataaaaa 3047954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 35259128 - 35259055
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||||||||||| ||| ||||||||||||||||  ||||||||||| || ||| |||||||||| |||||    
T  35259128 tattttttaaaaatgtaaaagttttcaatttccaatgcgctgattacacacacatttgtaaaaagttaccattt 35259055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 38172659 - 38172742
Alignment:
Q  149 ctaaattaagtattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgttaacattt 233  Q
    ||||||||| |||||||| |||||||| ||| ||||||||||  |||| | |||||||||||||||| |||||| |||| |||||    
T  38172659 ctaaattaattattcttt-aaaaatgtaaaagtttttaatttttaatgcactgattacacaaacttttataaaaagttatcattt 38172742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 49478858 - 49478910
Alignment:
Q  304 ttttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||||||||||| ||||||||||||||||| ||| |||||||| |||||    
T  49478858 ttttcaatttccaatgcactgattacacaaacttctatgaaaagttaccattt 49478910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 48968 - 48905
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    ||||||| |||||||| ||| |||||||||| ||||| || ||||||||||||||| |||||||    
T  48968 tattcttgaaaaatgtaaaagttttcaattttcaatgcaccgattacacaaactttcataaaaa 48905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 290615 - 290682
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||| ||||||| ||| |||||||||| ||||| |||||||||||||||||  || ||||||||    
T  290615 tattcttttaaaatgtcaaagttttcaatttacaatgcactgattacacaaacttcaatgaaaagtta 290682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 4851380 - 4851341
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatg 148  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  4851380 gtcttgttaacgagtgcctccgggacactctttaagcatg 4851341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 24034081 - 24034143
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaa 345  Q
    |||||||| ||||| | ||| ||||||||||| |||| |||||||||||||||| ||||||||    
T  24034081 tattctttcaaaatttaaaagttttcaatttctaatgcactgattacacaaactcttataaaa 24034143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 40053319 - 40053384
Alignment:
Q  285 ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||| ||| |||||||||| ||||  | | |||||||||||||| |||||||||||    
T  40053319 ttctttaaaaatgtcaaagttttcaattttcaatacatttattacacaaactttcataaaaagtta 40053384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 31043025 - 31043085
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataa 343  Q
    |||| ||||||||||| ||| |||||||||| ||||| | |||||||||||||||| ||||    
T  31043025 tattttttaaaaatgtcaaagttttcaattttcaatgcattgattacacaaactttcataa 31043085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 34861349 - 34861297
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||||||||||||||||||   ||| |||||||||||||| ||||||||||||    
T  34861349 ggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagta 34861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 39150551 - 39150603
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||||| ||||    
T  39150551 ggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagta 39150603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 17112673 - 17112712
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatg 148  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  17112673 gtcttgttaacgagtgccttcgaggcactctttaagcatg 17112712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 33791849 - 33791754
Alignment:
Q  135 actctttaagcatgctaaattaagta----ttcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    |||||||||| |||||||||||||||    ||||||||||| ||| ||| |||| ||||||||||  |  ||||||||||||||| |||||| ||||    
T  33791849 actctttaagtatgctaaattaagtaattattcttttaaaa-tgtcaaatttttcaatttccaatacaccgattacacaaactttcataaaaagtta 33791754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 39914742 - 39914703
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcat 147  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  39914742 ggtcttgttaacgagtgcttccgggacactctttaagcat 39914703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 51904651 - 51904588
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||| ||||||||||| ||||||||||||||||  |  | |||||||||||| |||||||    
T  51904651 tattcttttaaaatgttaaagttttcaatttccaatgccccaactacacaaactttcataaaaa 51904588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 4040924 - 4040990
Alignment:
Q  290 taaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    ||||| ||| ||| |||||||||| |||| |||| |||||||||||||| | ||||||||| |||||    
T  4040924 taaaagtgtcaaagttttcaattttcaatatacttattacacaaactttcacaaaaagttatcattt 4040990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 10355118 - 10355036
Alignment:
Q  274 taaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||| |||| ||||||||| |  |||||||||||||||||| ||| |||| |||||||||  ||||||| ||| |||||    
T  10355118 taaagtaattattttttaaaaatatctaaattttcaatttccaatataccgatttcacaaacttccataaaaaattaccattt 10355036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 40341573 - 40341635
Alignment:
Q  111 cttgttaacgagtgccttcgggacactctttaagcatgctaaattaagt-attcttttaaaaa 172  Q
    ||||||||||| |||| ||| ||||||||||||| || ||||||||||| ||| |||||||||    
T  40341573 cttgttaacgattgccctcgagacactctttaagtattctaaattaagtaatttttttaaaaa 40341635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 35543485 - 35543412
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||| ||||| | ||| ||||||||||||||| || | ||||||||||||||| || ||||||| |||||    
T  35543485 tatttttttaaaatatcaaagttttcaatttccaatatattaattacacaaacttttgtacaaagttaccattt 35543412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 290977 - 290864
Alignment:
Q  115 ttaacgagtgccttcgggacactctttaagcatgctaaat----taagtattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaa 210  Q
    ||||||||||  ||| ||||||||||||||||||||||||    ||| ||||| ||| ||||| | ||| ||||||||||||||||   ||| ||||||     
T  290977 ttaacgagtg--ttccggacactctttaagcatgctaaatagagtaattattc-tttcaaaatttaaaagtttttaatttccaatgcgctgactacacat 290881  T
Q  211 actttaataaaacgtta 227  Q
    ||||| |||||| ||||    
T  290880 acttttataaaaggtta 290864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 1656460 - 1656496
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatg 319  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  1656460 tattttttaaaaatgtcaaaattttcaatttccaatg 1656496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 7549812 - 7549848
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaag 144  Q
    ||||||||||||||||| | |||||||||||||||||    
T  7549812 ggtcttgttaacgagtgtcctcgggacactctttaag 7549848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 9931808 - 9931872
Alignment:
Q  292 aaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||| ||| |||||||||| ||||  | | |||||||||||||||||||||| ||| |||||    
T  9931808 aaaatgtcaaagttttcaattttcaatacattaattacacaaacttttataaaaaattaccattt 9931872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 26687501 - 26687557
Alignment:
Q  102 aaaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag 158  Q
    ||||| ||| || |||||||||||| |||| ||||||||||||||| ||||| ||||    
T  26687501 aaaaaaggtgttattaacgagtgccctcggaacactctttaagcattctaaaataag 26687557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 25317769 - 25317891
Alignment:
Q  103 aaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaat----taagtattcttttaaaaatgttaaaatttttaatttccaatgta 198  Q
    |||| ||||||||||||||| |||| |||||||||||| |||||||||||||    ||| ||||||||| ||||| | ||| |||| ||||||||||| |    
T  25317769 aaaagggtcttgttaacgagcgcctccgggacactcttcaagcatgctaaataaagtaattattctttt-aaaatttaaaagttttcaatttccaatgca 25317867  T
Q  199 ttgattacacaaactttaataaaa 222  Q
    | ||||||||||||||| ||||||    
T  25317868 tcgattacacaaacttttataaaa 25317891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 45757898 - 45758015
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    ||||||||||||||||| || |||  ||||||||||||||| |||||||||    ||||| ||||||||||| ||| |||| ||||| ||||| | ||||    
T  45757898 ggtcttgttaacgagtgtctccggatcactctttaagcatgttaaattaagcaattattc-tttaaaaatgtcaaagttttcaatttacaatgcactgat 45757996  T
Q  204 tacacaaactttaataaaa 222  Q
    |||||||||||| ||||||    
T  45757997 tacacaaactttcataaaa 45758015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 12140169 - 12140237
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaac-ttttataaaaagtta 350  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  12140169 tattcttttaaaatgtcaaagttttcaatttccaatgtactgattatacaaactttttataaaaagtta 12140237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 45757953 - 45758016
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||| |||||||    
T  45757953 tattctttaaaaatgtcaaagttttcaatttacaatgcactgattacacaaactttcataaaaa 45758016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 48551034 - 48551131
Alignment:
Q  259 gcactctttaagc--gctaaattaag----tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||  |||||||||||    |||||||||||||||| ||| |||||||||| ||||| || ||||||||||  |||||||||||||||    
T  48551034 gcactctttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattttcaatgcaccgattacacaattttttataaaaagtta 48551131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 29611989 - 29612106
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagt-attct--tttaaaaatgttaaaatttttaatttccaatgta-ttgat 203  Q
    |||||||||||||||||||  ||||||||||||||| ||| ||||| ||||| ||| |  ||||||||||| | | |||| ||||||||||| | || ||    
T  29611989 ggtcttgttaacgagtgcccccgggacactctttaaacattctaaaataagtaattattctttaaaaatgtgacagttttcaatttccaatgcactttat 29612088  T
Q  204 tacacaaactttaataaa 221  Q
    |||||||||||| |||||    
T  29612089 tacacaaactttcataaa 29612106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 25062032 - 25061987
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgatta 328  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  25062032 tattctttaaaaatgttaaaattttcaattttcaatgcactgatta 25061987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 49168734 - 49168828
Alignment:
Q  132 gacactctttaagcatgctaaatt----aagtattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaa 222  Q
    |||| ||||||| |||||||||||    || ||||||||||||||||   ||||||| |||||| || |||||||||||||||||||| ||||||    
T  49168734 gacattctttaaacatgctaaatttactaattattcttttaaaaatggctaaattttcaatttctaaagtattgattacacaaactttcataaaa 49168828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 3027122 - 3027070
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||||||||||||||||||| |||  |||||||||||||| ||||||||||||    
T  3027122 ggtcttgttaacgagtgcctccggagcactctttaagcattctaaattaagta 3027070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 25317820 - 25317892
Alignment:
Q  274 taaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||| ||| |||||||| ||||| | ||| |||||||||||||||| |  |||||||||||||||||||||||    
T  25317820 taaagtaattattcttttaaaatttaaaagttttcaatttccaatgcatcgattacacaaacttttataaaaa 25317892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 46725626 - 46725717
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta-ttcttt--taaaaatgttaaaatttttaatttccaatg 196  Q
    |||||| |||||||||| |  ||||| ||||||||||||| |||||||||||| || |||  |||||||||||||||||| ||||| |||||    
T  46725626 ggtcttattaacgagtgtccacgggatactctttaagcattctaaattaagtagttattttataaaaatgttaaaattttcaattttcaatg 46725717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 14146134 - 14146197
Alignment:
Q  293 aaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||| ||| ||||||||||| |||| ||||||||||||||||| |||||||| ||| |||||    
T  14146134 aaatgtcaaagttttcaatttctaatgcactgattacacaaacttctataaaaatttaccattt 14146197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 37388431 - 37388494
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||||| ||| |||||| ||| ||||| | |||||||||||| |||||||||||    
T  37388431 tattctttaaaaatgtgaaatttttcagttttcaatgcattgattacacaaatttttataaaaa 37388494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 20821327 - 20821401
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactg-attacacaaacttttataaaaagttaacattt 356  Q
    |||||||||||||| |||||  ||| ||||||||||| |||  |||||||||||||| ||||||||||| |||||    
T  20821327 tattctttaaaaatattaaaggttttaatttccaatgcactttattacacaaactttcataaaaagttaccattt 20821401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 11623610 - 11623492
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag---tattcttttaaaaatgttaaaatttttaatttccaatgta-ttgat 203  Q
    ||||||||||||||||| || |||| |||||||||||| |  |||||||||   ||||  ||||| ||||| ||||| || |||||||| || | ||  |    
T  11623610 ggtcttgttaacgagtgtctccggggcactctttaagctttttaaattaagtgatatttctttaataatgtcaaaatgttcaatttccattgcacttatt 11623511  T
Q  204 tacacaaactttaataaaa 222  Q
    |||||||||||||||||||    
T  11623510 tacacaaactttaataaaa 11623492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 37388370 - 37388493
Alignment:
Q  102 aaaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta-ttctt--ttaaaaatgttaaaatttttaatttccaatgta 198  Q
    ||||||||  ||||||||||||||||  || | |||||||||  ||| ||||||||||| || ||  |||||||||| ||| |||| | ||| ||||| |    
T  37388370 aaaaatgggtttgttaacgagtgcctctggaatactctttaaatatgttaaattaagtaattattctttaaaaatgtgaaatttttcagttttcaatgca 37388469  T
Q  199 ttgattacacaaactttaataaaa 222  Q
    ||||||||||||| ||| ||||||    
T  37388470 ttgattacacaaatttttataaaa 37388493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 12140145 - 12140224
Alignment:
Q  139 tttaagcatgctaaattaagta----ttcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaacttt 215  Q
    ||||||||||||||||||| ||    ||||||||||| ||| ||| |||| ||||||||||||| |||||| |||||||||    
T  12140145 tttaagcatgctaaattaaataattattcttttaaaa-tgtcaaagttttcaatttccaatgtactgattatacaaacttt 12140224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 54911225 - 54911292
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||| ||||||||||| |||| ||||| ||||  | |||||||| ||||||| |||||||||||    
T  54911225 tattcttttaaaatgttaaagttttaaattttcaatacattgattacataaactttcataaaaagtta 54911292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 29612044 - 29612106
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaa 344  Q
    |||||||||||||||| | | |||||||||||||||| || | |||||||||||||| |||||    
T  29612044 tattctttaaaaatgtgacagttttcaatttccaatgcactttattacacaaactttcataaa 29612106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 33072181 - 33072119
Alignment:
Q  295 atgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacatttc 357  Q
    |||| ||| |||||||||||||||| | | |||||||||| ||||||||||| ||| ||||||    
T  33072181 atgtcaaagttttcaatttccaatgcattaattacacaaatttttataaaaaattaccatttc 33072119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 45584389 - 45584343
Alignment:
Q  181 tttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    |||||||||| |||| ||||||||||||||||||| |||||| ||||    
T  45584389 tttttaattttcaatatattgattacacaaactttcataaaaagtta 45584343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 48180307 - 48180269
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcat 147  Q
    |||||||||||||||| || |||||||||||||||||||    
T  48180307 gtcttgttaacgagtgtctccgggacactctttaagcat 48180269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 49168771 - 49168829
Alignment:
Q  288 tttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    ||||||||||   |||||||||||||| || ||| |||||||||||||||| |||||||    
T  49168771 tttaaaaatggctaaattttcaatttctaaagtattgattacacaaactttcataaaaa 49168829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 53040516 - 53040558
Alignment:
Q  306 ttcaatttccaatgtactgattacacaaacttttataaaaagt 348  Q
    |||||||||||||||| ||| |||||||||||| |||||||||    
T  53040516 ttcaatttccaatgtattgaatacacaaactttcataaaaagt 53040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 20821332 - 20821401
Alignment:
Q  165 tttaaaaatgttaaaatttttaatttccaatgta-ttgattacacaaactttaataaaacgttaacattt 233  Q
    ||||||||| |||||  ||||||||||||||| | || |||||||||||||| |||||| |||| |||||    
T  20821332 tttaaaaatattaaaggttttaatttccaatgcactttattacacaaactttcataaaaagttaccattt 20821401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 46093694 - 46093653
Alignment:
Q  102 aaaaatggtcttgttaacgagtgccttcgggacactctttaa 143  Q
    ||||| |||||||||||||||||| ||||| |||||||||||    
T  46093694 aaaaagggtcttgttaacgagtgctttcggaacactctttaa 46093653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 53040438 - 53040555
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    ||||||| |||||||| |  ||| ||||||||||||| || ||||||||||    |||| ||| |||||| | |||   || |||||||||||||||||     
T  53040438 ggtcttgctaacgagtactctcgtgacactctttaaggattctaaattaagaaattattatttaaaaaat-tcaaatacttcaatttccaatgtattgaa 53040536  T
Q  204 tacacaaactttaataaaa 222  Q
    |||||||||||| ||||||    
T  53040537 tacacaaactttcataaaa 53040555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 28692006 - 28691950
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaactttt 339  Q
    |||||||| ||||||||||| ||||||||||| |||  | | |||||||||||||||    
T  28692006 tattcttttaaaatgttaaagttttcaatttctaatacaataattacacaaactttt 28691950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 34758898 - 34758934
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaag 144  Q
    |||||||||||||||||||| |||| |||||||||||    
T  34758898 ggtcttgttaacgagtgcctccggggcactctttaag 34758934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 46725688 - 46725744
Alignment:
Q  290 taaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaaa 345  Q
    |||||||||||||||||||||||| ||||| || | |||||||||| ||||| ||||    
T  46725688 taaaaatgttaaaattttcaattttcaatgcactttattacacaaatttttaaaaaa 46725744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 48551035 - 48551131
Alignment:
Q  134 cactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    |||||||||||||||||||||||||    ||||| ||||||||||| ||| |||| ||||| ||||| |  ||||||||||  ||| |||||| ||||    
T  48551035 cactctttaagcatgctaaattaagaaattattc-tttaaaaatgtcaaagttttcaattttcaatgcaccgattacacaattttttataaaaagtta 48551131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 50604022 - 50604074
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    ||||||||||||||||| || | || |||||||||| ||| ||||||||||||    
T  50604022 ggtcttgttaacgagtgtctccagggcactctttaaccattctaaattaagta 50604074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 54911225 - 54911292
Alignment:
Q  159 tattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    ||||||||||||| ||||||| |||| ||||| ||||  |||||||||| ||||||| |||||| ||||    
T  54911225 tattcttttaaaa-tgttaaagttttaaattttcaatacattgattacataaactttcataaaaagtta 54911292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 6411465 - 6411389
Alignment:
Q  274 taaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||| ||| |||||||| ||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  6411465 taaagtaattattcttttaaaatttaaaagttttcaatttccaatgtactgattacacatacttttataaaaagtta 6411389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 431716 - 431642
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||||||||||||||||||||||||||||||||| || |  ||||||||||||| ||||||||||| |||||    
T  431716 tattctttaaaaatgttaaaattttcaatttccaatgcacttttttacacaaactttcataaaaagttaccattt 431642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 565777 - 565707
Alignment:
Q  280 aagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||||||||||||||||| ||| |||||||||||| ||| ||| |||||||||||||| |||||||||||    
T  565777 aagtattctttaaaaatgtgaaagttttcaatttcctatgcactaattacacaaactttcataaaaagtta 565707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 30523029 - 30523094
Alignment:
Q  285 ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||| ||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||    
T  30523029 ttctttaacaatgtcaaagttttcaatttccaatgtactaattacacaaactttcataaaaagtta 30523094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 24389736 - 24389628
Alignment:
Q  258 ggcactctttaagc--gctaaattaagta----ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaa 351  Q
    ||||||||||||||  |||||||||||||    |||||| || |||| ||| ||||||||||||||||  ||||||||||||||||| |||| ||||||     
T  24389736 ggcactctttaagcatgctaaattaagtaattattcttttaagatgtcaaagttttcaatttccaatgcgctgattacacaaactttcataagaagttac 24389637  T
Q  352 catttccct 360  Q
    |||||||||    
T  24389636 catttccct 24389628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 12762953 - 12762898
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttt 338  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  12762953 tattcttaaaaaatgttaaaattttcaatttccaatgcactgtttacacaaacttt 12762898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 357
Target Start/End: Complemental strand, 6083984 - 6083910
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacatttc 357  Q
    |||| ||| ||||| | ||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  6083984 tattattttaaaatatcaaagttttcaattttcaatgtgctgattacacaaacttttataaaaagttatcatttc 6083910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 36480364 - 36480417
Alignment:
Q  103 aaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta 156  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  36480364 aaaatggtcttgttaacgagtgtcctcgggacactctttaagcattctaaatta 36480417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 2796594 - 2796546
Alignment:
Q  298 ttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  2796594 ttaaaattttcaattttcaatatactgattacacaaacttttataaaaa 2796546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 6334805 - 6334681
Alignment:
Q  112 ttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgattaca 207  Q
    ||||||||||||| | |||| ||||||||||| |||||||||||||     |||| |||||||||||| ||| |||| ||||||||||| |||||||| |    
T  6334805 ttgttaacgagtgtcctcggaacactctttaaacatgctaaattaaaaaattatt-ttttaaaaatgtcaaagttttcaatttccaatgcattgattata 6334707  T
Q  208 caaactttaataaaacgttaacattt 233  Q
     |||||||  ||||| |||| |||||    
T  6334706 taaacttttgtaaaaagttatcattt 6334681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 8086979 - 8087051
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacatt 355  Q
    |||| ||||||||||||||| ||||||||||  ||||||| ||| ||| ||||||||||||||| ||||||||    
T  8086979 tattttttaaaaatgttaaacttttcaatttttaatgtaccgataacataaacttttataaaaatttaacatt 8087051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 24389760 - 24389628
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    |||||||||||| |||  |  |||| |||||||||||||||||||||||||    ||||||||| || |||| ||| |||| |||||||||||   ||||    
T  24389760 ggtcttgttaacaagtatccacggggcactctttaagcatgctaaattaagtaattattctttt-aagatgtcaaagttttcaatttccaatgcgctgat 24389662  T
Q  204 tacacaaactttaataaaacgttaacatttccct 237  Q
    |||||||||||| |||| | |||| |||||||||    
T  24389661 tacacaaactttcataagaagttaccatttccct 24389628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 9049232 - 9049165
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||| ||||||||||| |||||||||| ||||| | | |||||||||| |||||||||||||||    
T  9049232 tattcttttaaaatgttaaatttttcaattttcaatgcattaattacacaaatttttataaaaagtta 9049165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 33068625 - 33068558
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||| ||||||||||| ||| ||||||||||| |||| |||||||| ||||||||| |||||||||||    
T  33068625 tattttttaaaaatgtgaaagttttcaatttctaatgcactgattatacaaactttcataaaaagtta 33068558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 12848554 - 12848488
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtt 349  Q
    |||||||||| ||||| ||| ||||||||||||| || ||| |||||||||||||| ||||||||||    
T  12848554 tattctttaataatgtcaaagttttcaatttccattgcactaattacacaaactttcataaaaagtt 12848488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 431770 - 431642
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta-ttctt--ttaaaaatgttaaaatttttaatttccaatgta-ttgatt 204  Q
    ||||||||||||||||||  | ||| |||||||||  || ||| |||||||| || ||  ||||||||||||||||||| ||||||||||| | ||  ||    
T  431770 gtcttgttaacgagtgcccccaggatactctttaaatattctatattaagtaattattctttaaaaatgttaaaattttcaatttccaatgcactttttt 431671  T
Q  205 acacaaactttaataaaacgttaacattt 233  Q
    ||||||||||| |||||| |||| |||||    
T  431670 acacaaactttcataaaaagttaccattt 431642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 6334754 - 6334681
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||||||||||| ||| |||||||||||||||| | |||||| | |||||||| |||||||||| |||||    
T  6334754 tattttttaaaaatgtcaaagttttcaatttccaatgcattgattatataaacttttgtaaaaagttatcattt 6334681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 30869695 - 30869613
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaagcatgctaaattaa--gtattcttttaaaaatgttaaaatttttaatttc 191  Q
    ||||||||||||||| || | || ||||||||||||||||||||||||   ||||| ||||||||||||||| |||| ||||||    
T  30869695 tcttgttaacgagtgtctccagggcactctttaagcatgctaaattaaatttattc-tttaaaaatgttaaagttttcaatttc 30869613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 33634880 - 33634813
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||| || ||||| | ||| |||||||||||||||||||||||| |||||  |||||||||||||||    
T  33634880 tattcgtttaaaatatgaaagttttcaatttccaatgtactgattgcacaactttttataaaaagtta 33634813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 565830 - 565707
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta------agtattcttttaaaaatgttaaaatttttaatttccaatgtattg 201  Q
    ||||||||||||||||| |  || || ||||||||||||||||||||||      ||||||| ||||||||||| ||| |||| ||||||| ||| | |     
T  565830 ggtcttgttaacgagtgtcc-cgagatactctttaagcatgctaaattaagtaaaagtattc-tttaaaaatgtgaaagttttcaatttcctatgcacta 565733  T
Q  202 attacacaaactttaataaaacgtta 227  Q
    |||||||||||||| |||||| ||||    
T  565732 attacacaaactttcataaaaagtta 565707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 3191187 - 3191257
Alignment:
Q  286 tctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||||||| ||||| |||||||||| || || | |||||| ||||||||||||||||| ||| |||||    
T  3191187 tctttaaaaatattaaatttttcaattttcattgcattgattatacaaacttttataaaaatttatcattt 3191257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 3882585 - 3882635
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag 158  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||| ||||    
T  3882585 ggtcttgttaacgagtgccctcggggcactctttaagcattctaaaataag 3882635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 15806101 - 15806055
Alignment:
Q  304 ttttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||    
T  15806101 ttttcaattttcaatgcattgattacacaaacttttataaaaagtta 15806055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 30869673 - 30869593
Alignment:
Q  258 ggcactctttaagc--gctaaattaagt--attctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaa 334  Q
    ||||||||||||||  |||||||||| |  ||||||||||||||||||| ||||||||||| |||  |||||| |||||||    
T  30869673 ggcactctttaagcatgctaaattaaatttattctttaaaaatgttaaagttttcaatttctaatacactgataacacaaa 30869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 5962102 - 5962057
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaa 153  Q
    |||||||||||||||||||| || |||||||||||||||| |||||    
T  5962102 ggtcttgttaacgagtgcctccgagacactctttaagcattctaaa 5962057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 32066756 - 32066813
Alignment:
Q  293 aaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||| ||| |||| |||||| |||||||| |||||||||||||| |||||||||||    
T  32066756 aaatgtcaaagtttttaatttctaatgtactaattacacaaactttcataaaaagtta 32066813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 42342571 - 42342499
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||||||||||| ||||||||||||||  |||  |||||||| ||||| ||| ||||||||||| |||||    
T  42342571 tattctttaaaaatgtcaaaattttcaattt-taatacactgattaaacaaattttcataaaaagttaccattt 42342499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 43678625 - 43678560
Alignment:
Q  291 aaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||| ||||| |||||||||| ||||||| | |||||||||||||||| ||||| ||| |||||    
T  43678625 aaaaatattaaagttttcaattttcaatgtattaattacacaaacttttaaaaaaaattatcattt 43678560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 9049256 - 9049165
Alignment:
Q  139 tttaagcatgctaaattaagta----ttcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    |||||||||| |||||||||||    ||||||||||| ||||||| |||| ||||| ||||| ||| |||||||||| ||| |||||| ||||    
T  9049256 tttaagcatgttaaattaagtaattattcttttaaaa-tgttaaatttttcaattttcaatgcattaattacacaaatttttataaaaagtta 9049165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 12762945 - 12762898
Alignment:
Q  168 aaaaatgttaaaatttttaatttccaatgtattgattacacaaacttt 215  Q
    ||||||||||||||||| ||||||||||| | || |||||||||||||    
T  12762945 aaaaatgttaaaattttcaatttccaatgcactgtttacacaaacttt 12762898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 18684329 - 18684379
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactcttt--aagcatgctaaatta 156  Q
    ||||||||||||||||||  ||||||||||||||  |||||||||||||||    
T  18684329 ggtcttgttaacgagtgctctcgggacactcttttaaagcatgctaaatta 18684379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 25626972 - 25627039
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||| ||||| ||||| |||||||||  | ||||||||| |||||| |||||| ||||    
T  25626972 tattctttaaaaattttaaagttttcgatttccaatacattgattacaccaactttcataaaaggtta 25627039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 29685840 - 29685789
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    ||||||||||||||||||| |||  |||||||||| |||||||||| |||||    
T  29685840 gtcttgttaacgagtgcctccggagcactctttaaacatgctaaataaagta 29685789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 33454964 - 33455059
Alignment:
Q  135 actctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    ||||||||||||||||||||||||    ||||| ||||||||||| ||| |||| ||||| ||||  |||||||||||||  ||| |||||| ||||    
T  33454964 actctttaagcatgctaaattaagaaactattc-tttaaaaatgtcaaagttttcaatttacaatacattgattacacaacttttcataaaaagtta 33455059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 33454992 - 33455059
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||||| ||| |||||||||| ||||  | |||||||||||  ||| |||||||||||    
T  33454992 tattctttaaaaatgtcaaagttttcaatttacaatacattgattacacaacttttcataaaaagtta 33455059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 30523032 - 30523094
Alignment:
Q  165 tttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    ||||| ||||| ||| |||| ||||||||||||| | |||||||||||||| |||||| ||||    
T  30523032 tttaacaatgtcaaagttttcaatttccaatgtactaattacacaaactttcataaaaagtta 30523094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 3666515 - 3666458
Alignment:
Q  165 tttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaa 222  Q
    ||||||||| |||||||||||||||  ||||  |||||||||| ||||||| ||||||    
T  3666515 tttaaaaatattaaaatttttaattctcaatacattgattacataaactttcataaaa 3666458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 6411510 - 6411389
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaat----taagtattcttttaaaaatgttaaaatttttaatttccaatgtattgatt 204  Q
    ||||||||||||||||  | | |  |||| ||||| ||||||||||    ||| ||||||||| ||||| | ||| |||| ||||||||||||| |||||    
T  6411510 gtcttgttaacgagtgtttccagagcactttttaaacatgctaaataaagtaattattctttt-aaaatttaaaagttttcaatttccaatgtactgatt 6411412  T
Q  205 acacaaactttaataaaacgtta 227  Q
    ||||| ||||| |||||| ||||    
T  6411411 acacatacttttataaaaagtta 6411389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 8964416 - 8964477
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaa 344  Q
    ||||||||||||| || |||  ||||||||||||||| | |||||||||||| ||| |||||    
T  8964416 tattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaa 8964477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 32066756 - 32066813
Alignment:
Q  170 aaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    |||||| ||| ||||||||||| |||||| | |||||||||||||| |||||| ||||    
T  32066756 aaatgtcaaagtttttaatttctaatgtactaattacacaaactttcataaaaagtta 32066813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 6084013 - 6083910
Alignment:
Q  134 cactctttaagcatgctaaattaagta-ttctt--ttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgttaaca 230  Q
    |||||||||||||| ||||||| |||| || ||  || ||||| | ||| |||| ||||| ||||||  |||||||||||||||| |||||| |||| ||    
T  6084013 cactctttaagcatactaaatttagtaattattattttaaaatatcaaagttttcaattttcaatgtgctgattacacaaacttttataaaaagttatca 6083914  T
Q  231 tttc 234  Q
    ||||    
T  6083913 tttc 6083910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 15816841 - 15816789
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||||||||||||||||||  | || |||||||||||||| |||||| |||||    
T  15816841 ggtcttgttaacgagtgcccccagggcactctttaagcatactaaataaagta 15816789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 20683134 - 20683098
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaag 144  Q
    |||||||||||||||||||  ||||||||||||||||    
T  20683134 ggtcttgttaacgagtgcccccgggacactctttaag 20683098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 24762851 - 24762815
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaag 144  Q
    |||||||||||||||||||||| || |||||||||||    
T  24762851 ggtcttgttaacgagtgccttcaggtcactctttaag 24762815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 32859754 - 32859802
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta 156  Q
    |||||||||||||||||||  | || |||||||||| ||||||||||||    
T  32859754 ggtcttgttaacgagtgcccccagggcactctttaaacatgctaaatta 32859802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 37313804 - 37313689
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagtattcttt---taaaaatgttaaaatttttaatttccaatgtattgatt 204  Q
    ||||||||||||||||| ||||| |||  | |||||||||  ||||||||||| | |||   ||||||  | ||||||||||||||  |||| | | |||    
T  37313804 ggtcttgttaacgagtgtcttcgagac--tttttaagcattttaaattaagtaatttttctttaaaaaaatcaaaatttttaatttgtaatgcactaatt 37313707  T
Q  205 acacaaactttaataaaa 222  Q
    ||||||||||||| ||||    
T  37313706 acacaaactttaaaaaaa 37313689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 37468290 - 37468330
Alignment:
Q  57 caaaaattgttcaaaaatgatttttcaaatatcatttctcc 97  Q
    ||||| ||||| |||||||||| ||||||||||||||||||    
T  37468290 caaaagttgtttaaaaatgattcttcaaatatcatttctcc 37468330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 44838631 - 44838703
Alignment:
Q  274 taaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||| ||| |||||||| ||||| | ||||  |||||||| ||||  | ||||||||||||||||||||||||    
T  44838631 taaagtaattattcttttaaaatttaaaaaaattcaattttcaatacattgattacacaaacttttataaaaa 44838703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 25438012 - 25437889
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||    |||||||| ||||| || |||   || ||||||||||||||| |     
T  25438012 ggtcttgttaacgagtgcccccgggacactctttaagcatgctaaattaagaagttattctttaaaaaaagtgaaacagttcaatttccaatgtattaaa 25437913  T
Q  204 tacacaaactttaataaaacgtta 227  Q
    |||||||  ||| |||||| ||||    
T  25437912 tacacaagttttcataaaaagtta 25437889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 21259500 - 21259427
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||||||| |||| |||||||| ||||| ||||| |||||||||||||||||  ||||||||||| |||||    
T  21259500 tattctttaaagatgtcaaaatttttaattttcaatgcactgattacacaaacttccataaaaagttatcattt 21259427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 36609213 - 36609150
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    ||||||| |||||| | ||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  36609213 tattcttcaaaaatatcaaagttttcaattttcaatgtactaattacacaaacttttataaaaa 36609150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 4695065 - 4695150
Alignment:
Q  132 gacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactt 214  Q
    ||||||||||||||||||||||||||     |||||||| |||||| ||||| |||||||||||||||| | |||||| ||||||||    
T  4695065 gacactctttaagcatgctaaattaaaaaattattcttt-aaaaatattaaagtttttaatttccaatgcactgattatacaaactt 4695150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 26432302 - 26432359
Alignment:
Q  299 taaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| ||| |||||    
T  26432302 taaacttttcaatttccaatgtactgattacactaactttcataaaaatttaccattt 26432359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 10228333 - 10228409
Alignment:
Q  274 taaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||| ||| |||||||| ||||| | ||| |||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  10228333 taaagtaattattctttcaaaatttaaaagttttcaatttccgatgcactggttacacaaacttttttaaaaagtta 10228409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 16636740 - 16636672
Alignment:
Q  288 tttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||||| | ||| || ||||||| ||||| ||| |||||||||||||||||||||||||| |||||    
T  16636740 tttaaaaatatcaaagttgtcaattttcaatgcactaattacacaaacttttataaaaagttaccattt 16636672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 28639576 - 28639640
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaaaa 346  Q
    |||||||||||||||||||| ||||||  |||||||| || | ||||||||||||||||||||||    
T  28639576 tattctttaaaaatgttaaagttttcagcttccaatgcactttattacacaaacttttataaaaa 28639640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 4695096 - 4695159
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||| ||||| |||| ||||||||||| |||||||| ||||||||  |||||||    
T  4695096 tattctttaaaaatattaaagtttttaatttccaatgcactgattatacaaacttccataaaaa 4695159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 26686738 - 26686667
Alignment:
Q  279 taagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||||||||| ||| |||| ||||| ||||  |  ||||||||||||||| |||||||||||    
T  26686738 taagtattctttaaaaatgtaaaagtttttaattttcaatacatcgattacacaaactttcataaaaagtta 26686667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 26956469 - 26956398
Alignment:
Q  279 taagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||||||||| ||| |||| ||||| ||||  |  ||||||||||||||| |||||||||||    
T  26956469 taagtattctttaaaaatgtaaaagtttttaattttcaatacatcgattacacaaactttcataaaaagtta 26956398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 10410419 - 10410510
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag---tattcttttaaaaatgttaaaatttttaatttccaatg 196  Q
    |||||||||||||||||||  |||| |||||||||| | | ||||||||||   |||| |||||||||||| | ||| || |||||||||||    
T  10410419 ggtcttgttaacgagtgcccccggggcactctttaaactttctaaattaagtaatatttttttaaaaatgtcagaatattcaatttccaatg 10410510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 21259495 - 21259427
Alignment:
Q  165 tttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgttaacattt 233  Q
    |||||| |||| |||||||||||||| ||||| | |||||||||||||||  |||||| |||| |||||    
T  21259495 tttaaagatgtcaaaatttttaattttcaatgcactgattacacaaacttccataaaaagttatcattt 21259427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 26686738 - 26686667
Alignment:
Q  155 taagtattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    |||||||||||| |||||||| ||| |||||||||| ||||  || ||||||||||||||| |||||| ||||    
T  26686738 taagtattcttt-aaaaatgtaaaagtttttaattttcaatacatcgattacacaaactttcataaaaagtta 26686667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 26956469 - 26956398
Alignment:
Q  155 taagtattcttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgtta 227  Q
    |||||||||||| |||||||| ||| |||||||||| ||||  || ||||||||||||||| |||||| ||||    
T  26956469 taagtattcttt-aaaaatgtaaaagtttttaattttcaatacatcgattacacaaactttcataaaaagtta 26956398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 14309169 - 14309106
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||| | ||| |||||||||||||||| | | |||||||||| ||| |||||||    
T  14309169 tattctttaaaaatatcaaagttttcaatttccaatgcattaattacacaaattttcataaaaa 14309106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 12448702 - 12448756
Alignment:
Q  290 taaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaa 344  Q
    |||||| ||||||  ||||||||| ||||| | ||||||||||||||||||||||    
T  12448702 taaaaaagttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 12448756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 26453723 - 26453661
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaa 345  Q
    |||| ||||||||||| ||| |||||||||| |||||  ||| ||||||||| ||||||||||    
T  26453723 tattttttaaaaatgtcaaacttttcaattttcaatgcgctggttacacaaatttttataaaa 26453661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 22601799 - 22601872
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||||||||| | |||||||| ||||| ||||  |||||||| ||||| ||||||||||| ||| |||||    
T  22601799 tattttttaaaaatatcaaaatttttaattttcaataaactgattatacaaatttttataaaaatttatcattt 22601872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 27325906 - 27325833
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||||||||||| ||| |||||||||| ||||| |||| |||||  || |||| |||||| ||| |||||    
T  27325906 tattctttaaaaatgtcaaacttttcaattttcaatgcactggttacattaatttttgtaaaaatttatcattt 27325833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 27794941 - 27794868
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||| ||||| | ||||||||||||||| ||||   |||||| ||||||||||||||||| ||| |||||    
T  27794941 tattgttttaaaatatcaaaattttcaatttcaaatgcgatgattatacaaacttttataaaaaattaccattt 27794868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 33958292 - 33958341
Alignment:
Q  57 caaaaattgttcaaaaatgatttttcaaatatcatttctcctttcaaaaa 106  Q
    |||||||| | ||||||||||| |||||||||||||||||  ||||||||    
T  33958292 caaaaattatccaaaaatgattgttcaaatatcatttctctgttcaaaaa 33958341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 35634878 - 35634911
Alignment:
Q  67 tcaaaaatgatttttcaaatatcatttctccttt 100  Q
    |||||||||||| |||||||||||||||||||||    
T  35634878 tcaaaaatgattgttcaaatatcatttctccttt 35634911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 38595013 - 38594940
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||| ||||||| |||||||||||||||||||| | | |||| | ||| ||| ||||||| ||| |||||    
T  38595013 tattcttttaaaatgtcaaaattttcaatttccaatgcattaattatataaattttcataaaaatttatcattt 38594940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 23023602 - 23023646
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaa 152  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||    
T  23023602 ggtcttgttaacgagtgcccccggggcactctttaagcattctaa 23023646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 34032227 - 34032175
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    ||||||||||||||||| | | ||| |||||||||||||| ||||| ||||||    
T  34032227 ggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagta 34032175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 8237974 - 8238047
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||||||| ||||||||||| |||||    
T  8237974 tattctttaaaaatgtcaaagttttcatttttcaatgcactgattacacaaactttcataaaaagttaccattt 8238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 34299886 - 34299758
Alignment:
Q  102 aaaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaag----tattcttttaaaaatgttaaaatttttaatttccaatgt 197  Q
    ||||| |||||||||||||||||||  |||| |||| ||||||||||||| ||||||    ||||| ||||||||||| ||| |||| ||||| ||| |     
T  34299886 aaaaagggtcttgttaacgagtgcccccggggcactttttaagcatgctagattaagcaattattc-tttaaaaatgtcaaagttttcaatttacaaagc 34299788  T
Q  198 attgattacacaaactttaataaaacgtta 227  Q
    | |||||||||||||||| |||||| ||||    
T  34299787 actgattacacaaactttcataaaaagtta 34299758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 34299825 - 34299758
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||||| ||| |||||||||| ||| | |||||||||||||||||| |||||||||||    
T  34299825 tattctttaaaaatgtcaaagttttcaatttacaaagcactgattacacaaactttcataaaaagtta 34299758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 19620016 - 19620083
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||| ||||  ||| |||||||||||    
T  19620016 tattctttaaaaatgtcaaagttttcaatttccaatgcactgattatacaacttttcataaaaagtta 19620083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 43492284 - 43492210
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||||| |||||| ||||||| |||||||||||| || | |||||||||||||| ||||||||||| |||||    
T  43492284 tattctttagaaatgtcaaaatttacaatttccaatgcactttattacacaaactttaataaaaagttaccattt 43492210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 24610920 - 24610847
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||| ||||||||||| |||| |||||| |||  ||| |||||||||||||||||||||| ||| |||||    
T  24610920 tattcttttaaaatgttaaagttttgaatttctaattcactaattacacaaacttttataaaaaattatcattt 24610847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 43492313 - 43492210
Alignment:
Q  134 cactctttaagcatgctaaattaagta-ttctt--ttaaaaatgttaaaatttttaatttccaatgta-ttgattacacaaactttaataaaacgttaac 229  Q
    |||||||||||||| |||||||||||| || ||  ||| |||||| |||||||  ||||||||||| | || ||||||||||||||||||||| |||| |    
T  43492313 cactctttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaatttccaatgcactttattacacaaactttaataaaaagttacc 43492214  T
Q  230 attt 233  Q
    ||||    
T  43492213 attt 43492210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 9097830 - 9097787
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaa 152  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  9097830 gtcttgttaacgagtgccttcgggtcactctttaagcatactaa 9097787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 10453488 - 10453539
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaa 334  Q
    |||||||||||||| |||||||||||||||| ||||| | ||||||||||||    
T  10453488 tattctttaaaaatattaaaattttcaattttcaatgcattgattacacaaa 10453539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 32699397 - 32699447
Alignment:
Q  300 aaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||||||||    
T  32699397 aaaattttcaatttcaaatgcactgattgcacaaactttcataaaaagtta 32699447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 5907794 - 5907909
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta--ttcttttaaaaatgttaaaatttttaatttccaatgtattgatta 205  Q
    ||||||||||||||||||| | ||| |||||||||||||| ||||||||||||  |  ||||  |||||| ||| ||||| |||||||||| | | ||||    
T  5907794 ggtcttgttaacgagtgccctaggg-cactctttaagcattctaaattaagtaattatttttttaaatgtcaaacttttttatttccaatgcactaatta 5907892  T
Q  206 cacaaactttaataaaa 222  Q
    ||| || ||| ||||||    
T  5907893 cactaattttcataaaa 5907909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 3267701 - 3267629
Alignment:
Q  274 taaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||| ||| |||||||| ||||| | ||| ||||| |||| ||||| ||| ||||||||||||||||||||||    
T  3267701 taaagtaattattcttttaaaatttaaaagttttccattttcaatgcactcattacacaaacttttataaaaa 3267629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 26871786 - 26871858
Alignment:
Q  274 taaattaagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||| ||| |||||||| ||||| | ||| |||| ||||| || | |||||||||||||||||||||||||||    
T  26871786 taaagtaattattcttttaaaatttaaaagttttgaattttcattatactgattacacaaacttttataaaaa 26871858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 8237922 - 8238047
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta-ttctt--ttaaaaatgttaaaatttttaatttccaatgtattgattac 206  Q
    |||| ||||||||||||| | ||||| | |||||| || |||||||||||| || ||  |||||||||| ||| |||| | ||| ||||| | |||||||    
T  8237922 tcttattaacgagtgcct-caggacattatttaagtatactaaattaagtaattattctttaaaaatgtcaaagttttcatttttcaatgcactgattac 8238020  T
Q  207 acaaactttaataaaacgttaacattt 233  Q
    ||||||||| |||||| |||| |||||    
T  8238021 acaaactttcataaaaagttaccattt 8238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 24299213 - 24299146
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||| |||||||||| ||| |||| ||||||||||| |||||||| ||||  ||| |||||||||||    
T  24299213 tattccttaaaaatgtcaaattttttaatttccaatgcactgattatacaacttttcataaaaagtta 24299146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 28770446 - 28770485
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcat 147  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  28770446 ggtcttgttaacgagtgcctccggggcactctttaagcat 28770485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 35599942 - 35599891
Alignment:
Q  105 aatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta 156  Q
    ||||||||||||||||||||||| || || ||||||||| ||| ||||||||    
T  35599942 aatggtcttgttaacgagtgcctccgagatactctttaaacatactaaatta 35599891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 39316375 - 39316308
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||||| || ||||| ||||||||||||||  | ||||||| |||||||| |||| |||||||||||    
T  39316375 tattcttcaataatgtcaaaattttcaatttttactgtactggttacacaagctttcataaaaagtta 39316308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 44452176 - 44452061
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagt-attct--tttaaaaatgttaaaatttttaatttccaatgta-ttgatt 204  Q
    ||||||||||||||||||  |  |||||||||||| ||| ||||||||||| ||| |  ||||||||| | |||| ||| ||||||||||| | || |||    
T  44452176 gtcttgttaacgagtgcc--ccagacactctttaaacattctaaattaagtaattattatttaaaaatatcaaaagtttcaatttccaatgcactttatt 44452079  T
Q  205 acacaaactttaataaaa 222  Q
    ||||||||||| ||||||    
T  44452078 acacaaactttcataaaa 44452061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 7432660 - 7432734
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactg-attacacaaacttttataaaaagttaacattt 356  Q
    |||| ||||||||| ||||| |||| ||||| ||||| |||  ||| |||||||||||||||||||||| |||||    
T  7432660 tattatttaaaaatattaaagtttttaattttcaatgcactttattgcacaaacttttataaaaagttaccattt 7432734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 10453493 - 10453539
Alignment:
Q  165 tttaaaaatgttaaaatttttaatttccaatgtattgattacacaaa 211  Q
    ||||||||| |||||||||| ||||| ||||| ||||||||||||||    
T  10453493 tttaaaaatattaaaattttcaattttcaatgcattgattacacaaa 10453539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 31498764 - 31498656
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta---ttcttttaaaaatgttaaaatttttaatttccaatgtattgattac 206  Q
    |||||||||||||||| | ||   |||||||||| ||| ||||||||||||    | |||| ||||||||||| |||| ||||| ||||  ||||||| |    
T  31498764 tcttgttaacgagtgcttccgttgcactctttaaacattctaaattaagtaaatatttttttaaaatgttaaagttttcaattttcaatacattgattgc 31498665  T
Q  207 acaaacttt 215  Q
    |||||||||    
T  31498664 acaaacttt 31498656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 3267747 - 3267630
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta----ttcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    |||||||||||   ||| || |||||||||||||||||||||||||| |||||    ||||||||||| | | ||| ||||  |||| ||||| | | ||    
T  3267747 ggtcttgttaataggtgtctccgggacactctttaagcatgctaaataaagtaattattcttttaaaatt-taaaagttttccattttcaatgcactcat 3267649  T
Q  204 tacacaaactttaataaaa 222  Q
    |||||||||||| ||||||    
T  3267648 tacacaaacttttataaaa 3267630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 17302854 - 17302899
Alignment:
Q  102 aaaaatggtcttgttaacgagtgccttcgggacactctttaagcat 147  Q
    ||||| |||||||||||||||||||  ||| |||||||||||||||    
T  17302854 aaaaagggtcttgttaacgagtgcccccggtacactctttaagcat 17302899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 85776 - 85720
Alignment:
Q  164 ttttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataa 220  Q
    |||||||||||||||| ||| |||||||||||  |||||| ||| ||||||| ||||    
T  85776 ttttaaaaatgttaaattttataatttccaatacattgatcacataaacttttataa 85720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 27123243 - 27123295
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    |||||||||||||||||||  |||| |||||||||||||| | ||||| ||||    
T  27123243 ggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagta 27123295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 27766828 - 27766776
Alignment:
Q  103 aaaatggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatt 155  Q
    |||| |||||||||||||||||||  | || |||||||||||||| |||||||    
T  27766828 aaaagggtcttgttaacgagtgcccccagggcactctttaagcattctaaatt 27766776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 36973305 - 36973353
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta 156  Q
    |||||||||||||||||||| |||  |||||||||||||| | ||||||    
T  36973305 ggtcttgttaacgagtgcctccggtgcactctttaagcattccaaatta 36973353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 43234759 - 43234811
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    ||||||||||||||||||  |||||||| ||||||||||| ||| ||| ||||    
T  43234759 ggtcttgttaacgagtgctctcgggacattctttaagcatcctatatttagta 43234811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 43996326 - 43996366
Alignment:
Q  112 ttgttaacgagtgccttcgggacactctttaagcatgctaa 152  Q
    ||||||||||||| | |||||||||||||||||||| ||||    
T  43996326 ttgttaacgagtgtcatcgggacactctttaagcatactaa 43996366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 44452124 - 44452060
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaaaa 346  Q
    |||| ||||||||| | |||| ||||||||||||||| || | |||||||||||||| |||||||    
T  44452124 tattatttaaaaatatcaaaagtttcaatttccaatgcactttattacacaaactttcataaaaa 44452060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 26694 - 26792
Alignment:
Q  258 ggcactctttaagc--gctaaattaagta----ttctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagtta 350  Q
    ||||||||||||||  |||||||||||||    || ||| ||||||| ||| |||||||||| ||||| ||||||||||||||||||  ||||||||||    
T  26694 ggcactctttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattttcaatgcactgattacacaaactttcgtaaaaagtta 26792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 26696 - 26780
Alignment:
Q  134 cactctttaagcatgctaaattaagt-attct--tttaaaaatgttaaaatttttaatttccaatgtattgattacacaaacttt 215  Q
    |||||||||||||||||||||||||| ||| |  ||| ||||||| ||| |||| ||||| ||||| | ||||||||||||||||    
T  26696 cactctttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattttcaatgcactgattacacaaacttt 26780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 19591 - 19664
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    |||||||||||||||||||| ||||||||||  ||| ||  ||||||||||| ||| ||||||||||| |||||    
T  19591 tattctttaaaaatgttaaagttttcaatttttaatatatcgattacacaaattttcataaaaagttatcattt 19664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 19596 - 19664
Alignment:
Q  165 tttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgttaacattt 233  Q
    ||||||||||||||| |||| |||||  ||| ||| ||||||||||| ||| |||||| |||| |||||    
T  19596 tttaaaaatgttaaagttttcaatttttaatatatcgattacacaaattttcataaaaagttatcattt 19664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 23344597 - 23344669
Alignment:
Q  285 ttctttaaaaatgttaaaattttcaatttccaatgtactg-attacacaaacttttataaaaagttaacattt 356  Q
    ||||||| |||||| ||| | |||||||||||||| |||  |||||||||||||||||||||||||| |||||    
T  23344597 ttctttacaaatgtcaaagtgttcaatttccaatgcactttattacacaaacttttataaaaagttaccattt 23344669  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 13445817 - 13445750
Alignment:
Q  279 taagtattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||||||||| ||| ||||||||||| || | ||| || ||||||||||| |||||||    
T  13445817 taagtattctttaaaaatgtgaaagttttcaatttcaaaagcactaatcacacaaactttcataaaaa 13445750  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 13445868 - 13445751
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagcatgctaaatta----agtattcttttaaaaatgttaaaatttttaatttccaatgtattgat 203  Q
    ||||||||||||||||| |  |||  |||||||||||||||||||||||    ||||||| ||||||||||| ||| |||| |||||| || | | | ||    
T  13445868 ggtcttgttaacgagtgtccccggtgcactctttaagcatgctaaattaagtaagtattc-tttaaaaatgtgaaagttttcaatttcaaaagcactaat 13445770  T
Q  204 tacacaaactttaataaaa 222  Q
     ||||||||||| ||||||    
T  13445769 cacacaaactttcataaaa 13445751  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 10364767 - 10364830
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaa 346  Q
    |||||||||||||| | ||| |||||||||| ||||| |||||||| || |||||| |||||||    
T  10364767 tattctttaaaaatatcaaagttttcaatttacaatgcactgattatacgaactttcataaaaa 10364830  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 233
Target Start/End: Complemental strand, 29716895 - 29716773
Alignment:
Q  115 ttaacgagtgccttcgggacactctttaagcatgctaaatt----aagtattcttttaaaaatgttaaaatttttaatttccaatgta-ttgattacaca 209  Q
    ||||||||||||| |  |||||| ||||||||| |||||||    || |||| |||| ||||||| ||| |||| ||||||||||| | || ||||||||    
T  29716895 ttaacgagtgcctccatgacactttttaagcattctaaattcagcaattatt-tttttaaaatgtcaaagttttcaatttccaatgcactttattacaca 29716797  T
Q  210 aactttaataaaacgttaacattt 233  Q
    |||||| |||||| |||| |||||    
T  29716796 aactttcataaaaggttaccattt 29716773  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 29716847 - 29716773
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtac-tgattacacaaacttttataaaaagttaacattt 356  Q
    |||| ||| ||||||| ||| |||||||||||||||| || | |||||||||||||| |||||| |||| |||||    
T  29716847 tatttttttaaaatgtcaaagttttcaatttccaatgcactttattacacaaactttcataaaaggttaccattt 29716773  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 2242054 - 2242103
Alignment:
Q  57 caaaaattgttcaaaaatgatttttcaaatatcatttctcctttcaaaaa 106  Q
    ||||||||||  |||||||||| ||||||||||||||||| ||| |||||    
T  2242054 caaaaattgtcaaaaaatgattgttcaaatatcatttctctttttaaaaa 2242103  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 3605153 - 3605116
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaagc 145  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  3605153 ggtcttgttaacgagtgtcatcgggacactctttaagc 3605116  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 2424427 - 2424391
Alignment:
Q  110 tcttgttaacgagtgccttcgggacactctttaagca 146  Q
    ||||||||||||||| || ||||||||||||||||||    
T  2424427 tcttgttaacgagtgtctccgggacactctttaagca 2424391  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 30739572 - 30739620
Alignment:
Q  112 ttgttaacgagtgccttcgggacactctttaagcatgctaaattaagta 160  Q
    ||||||||||||| ||||||| ||||||||||| || ||||||| ||||    
T  30739572 ttgttaacgagtgtcttcggggcactctttaagtattctaaatttagta 30739620  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 34552405 - 34552369
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatg 319  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  34552405 tattctttaaaaatattaaagttttcaatttccaatg 34552369  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 35229261 - 35229297
Alignment:
Q  108 ggtcttgttaacgagtgccttcgggacactctttaag 144  Q
    |||||||||||||||||||  ||||||||||||||||    
T  35229261 ggtcttgttaacgagtgcccccgggacactctttaag 35229297  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 13417 - 13344
Alignment:
Q  283 tattctttaaaaatgttaaaattttcaatttccaatgtactgattacacaaacttttataaaaagttaacattt 356  Q
    ||||||||||||||  |||||| || ||||||||||| | | |||||||||||||| ||||||  |||||||||    
T  13417 tattctttaaaaatagtaaaatctttaatttccaatgcaataattacacaaactttcataaaattttaacattt 13344  T

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Target: scaffold0027; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 13412 - 13344
Alignment:
Q  165 tttaaaaatgttaaaatttttaatttccaatgtattgattacacaaactttaataaaacgttaacattt 233  Q
    |||||||||  |||||| |||||||||||||| | | |||||||||||||| ||||||  |||||||||    
T  13412 tttaaaaatagtaaaatctttaatttccaatgcaataattacacaaactttcataaaattttaacattt 13344  T

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Target: scaffold0201 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 8510 - 8472
Alignment:
Q  58 aaaaattgttcaaaaatgatttttcaaatatcatttctc 96  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  8510 aaaaattgttaaaaaatgattgttcaaatatcatttctc 8472  T

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Target: scaffold0246 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 18245 - 18201
Alignment:
Q  109 gtcttgttaacgagtgccttcgggacactctttaagcatgctaaa 153  Q
    ||||||| |||||||||||  ||||||||||||||| ||||||||    
T  18245 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaa 18201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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