View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_high_33 (Length: 473)
Name: NF1271_high_33
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 26721683 - 26722147
Alignment:
| Q |
1 |
aaaaatgaaccaagagaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaagga |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
26721683 |
aaaaatgaaccaaaaggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggatgaatggtgttgtcgctgctatcctttcaagga |
26721782 |
T |
|
| Q |
101 |
atgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctcattctcttattacttttaat |
200 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
26721783 |
atgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaaacaaactcacttttttttatctcattctcttcttacttttaat |
26721882 |
T |
|
| Q |
201 |
ttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721883 |
ttcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatgagccttggatt |
26721982 |
T |
|
| Q |
301 |
atgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26721983 |
atgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctca |
26722082 |
T |
|
| Q |
401 |
taatcacaaaaccaaaaggcatcattccttctccaattaattttttcttctcactcagaataatc |
465 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26722083 |
taatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaataatc |
26722147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 45117226 - 45116775
Alignment:
| Q |
1 |
aaaaatgaaccaagagaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaagga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
45117226 |
aaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcatagacgaaggatgaaaggtgttgtcgctgccatcctttcaagga |
45117127 |
T |
|
| Q |
101 |
atgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcacnnnnnnnnnnctcattctcttattacttttaat |
200 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
45117126 |
atgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaacatcaaattcacttttttttatctcattctcttcttacttttaat |
45117027 |
T |
|
| Q |
201 |
ttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117026 |
ttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggatt |
45116927 |
T |
|
| Q |
301 |
atgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctca |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45116926 |
atgatttgag-------------aaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctca |
45116840 |
T |
|
| Q |
401 |
taatcacaaaaccaaaaggcatcattccttctccaattaattttttcttctcactcagaataatc |
465 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45116839 |
taatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaataatc |
45116775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 2987151 - 2987603
Alignment:
| Q |
1 |
aaaaatgaaccaagagaagaggatttcagttagattcacgacaacagaggatttcatagacgaaggatgaatggtgttgtcgctgccatccattcaagga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
2987151 |
aaaaatgaaccaagaggagaggatttcagttagattcacgacgacagaggatttcgtagacgaaggatgaaaggtgttgtcgctgccatcctttcaagga |
2987250 |
T |
|
| Q |
101 |
atgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaacatcaaactcac-nnnnnnnnnnctcattctcttattacttttaa |
199 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
2987251 |
atgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaacatcaaattcactttttttttatctcattctcttcttacttttaa |
2987350 |
T |
|
| Q |
200 |
tttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2987351 |
tttcattttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggat |
2987450 |
T |
|
| Q |
300 |
tatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctc |
399 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
2987451 |
tatg-------------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaattctc |
2987537 |
T |
|
| Q |
400 |
ataatcacaaaaccaaaaggcatcattccttctccaattaattttttcttctcactcagaataatc |
465 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2987538 |
ataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactcagaataatc |
2987603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University