View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_35 (Length: 468)
Name: NF1271_high_35
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 75 - 406
Target Start/End: Complemental strand, 40199718 - 40199387
Alignment:
| Q |
75 |
ttactgacataaaaaatcaggctaaagagtggccatctttaaaactgaacaatggtcattttcactaggagtagtcttatgatagtgatgttttccccaa |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40199718 |
ttactgacataaaaaatcaggctaaagagtggccatctttaaaactgaacaatggtcattttcactaggagtagtcttatgatagtgatgttttccccaa |
40199619 |
T |
|
| Q |
175 |
aataatattagctatgtgtttgaacagaaaatccagatttaaagaaaatgaataaaacacacacaagagcgcagccgattgatcacagaggccagccaat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40199618 |
aataatattagctatgtgtttgaacagaaaatccagatttaaagaaaatgaataaaacacacacaagagcgcagccgattgatcacagaggccagccaat |
40199519 |
T |
|
| Q |
275 |
tgtcctatgtcttcgacagcagagtagctattgtgatgtctattaagtaagcttagggttacaaattactacagtccagattacaagtttgtcactcgct |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40199518 |
tgtcctatgtcttcgacagcagagtagctattgtgatgtctattaagtaagcttagggttacaaattactacagtccagattacaagtttgtcactcgct |
40199419 |
T |
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| Q |
375 |
ccacttccctcgttatgctttcagctccactc |
406 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
40199418 |
ccacttccttcgttatgctttcagctccactc |
40199387 |
T |
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