View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_high_39 (Length: 463)
Name: NF1271_high_39
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_high_39 |
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| [»] scaffold0286 (2 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 13391 - 13132
Alignment:
| Q |
13 |
aatatataggtggaagaattctcggccagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13391 |
aatatataggtggaagaattcttggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
13292 |
T |
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| Q |
113 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
13291 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaata |
13192 |
T |
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| Q |
213 |
gaacagaatacaaagggaaaagctacatacaagtctgtgccctacaggaactcaggggac |
272 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13191 |
gaacagaatacaaagagaaaagctacatacaagtctgtgccctacaggaactcgggggac |
13132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 359 - 463
Target Start/End: Complemental strand, 13044 - 12940
Alignment:
| Q |
359 |
gatgcgggtggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
458 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13044 |
gatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
12945 |
T |
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| Q |
459 |
tgaat |
463 |
Q |
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| T |
12944 |
tgaat |
12940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 2169871 - 2170130
Alignment:
| Q |
13 |
aatatataggtggaagaattctcggccagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2169871 |
aatatataggtggaagaattcttggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
2169970 |
T |
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| Q |
113 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaata |
212 |
Q |
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| T |
2169971 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaata |
2170070 |
T |
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| Q |
213 |
gaacagaatacaaagggaaaagctacatacaagtctgtgccctacaggaactcaggggac |
272 |
Q |
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| T |
2170071 |
gaacagaatacaaagagaaaagctacatacaagtctgtgccctacaggaactcgggggac |
2170130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 359 - 463
Target Start/End: Original strand, 2170217 - 2170321
Alignment:
| Q |
359 |
gatgcgggtggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
458 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170217 |
gatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
2170316 |
T |
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| Q |
459 |
tgaat |
463 |
Q |
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||||| |
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| T |
2170317 |
tgaat |
2170321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 463
Target Start/End: Complemental strand, 2188357 - 2188299
Alignment:
| Q |
405 |
tttctcattcatacggattggtgaatcgaatatcctccatactacttttcagcttgaat |
463 |
Q |
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| T |
2188357 |
tttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaat |
2188299 |
T |
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