View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_high_40 (Length: 461)

Name: NF1271_high_40
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_high_40
NF1271_high_40
[»] chr5 (10 HSPs)
chr5 (40-454)||(37077626-37078040)
chr5 (161-284)||(973098-973221)
chr5 (77-125)||(7113630-7113678)
chr5 (51-120)||(972813-972883)
chr5 (177-250)||(2243315-2243388)
chr5 (80-118)||(2243339-2243377)
chr5 (10-40)||(37077557-37077587)
chr5 (80-118)||(41264387-41264425)
chr5 (80-121)||(973125-973166)
chr5 (174-223)||(7215322-7215371)
[»] chr1 (16 HSPs)
chr1 (62-121)||(52432656-52432716)
chr1 (76-121)||(46080981-46081026)
chr1 (175-223)||(5500843-5500891)
chr1 (51-121)||(2534436-2534507)
chr1 (55-109)||(3367746-3367801)
chr1 (174-209)||(11426631-11426666)
chr1 (76-119)||(42819631-42819674)
chr1 (52-102)||(45136757-45136808)
chr1 (76-126)||(10775173-10775223)
chr1 (177-223)||(52432836-52432882)
chr1 (166-223)||(10775155-10775212)
chr1 (52-120)||(34601630-34601699)
chr1 (174-223)||(45967852-45967901)
chr1 (174-223)||(46080971-46081020)
chr1 (62-120)||(38839682-38839739)
chr1 (169-213)||(42819616-42819660)
[»] chr2 (8 HSPs)
chr2 (54-120)||(2248957-2249024)
chr2 (177-223)||(16863459-16863505)
chr2 (52-121)||(38576957-38577027)
chr2 (64-120)||(16863453-16863510)
chr2 (55-121)||(16576236-16576303)
chr2 (174-250)||(16576248-16576324)
chr2 (54-120)||(34176630-34176697)
chr2 (174-276)||(38576750-38576843)
[»] chr6 (9 HSPs)
chr6 (53-116)||(20067902-20067966)
chr6 (166-217)||(32342592-32342643)
chr6 (86-125)||(32047194-32047233)
chr6 (76-125)||(32342610-32342659)
chr6 (177-225)||(20206479-20206527)
chr6 (177-225)||(22100502-22100550)
chr6 (66-115)||(20206481-20206531)
chr6 (66-115)||(22100504-22100554)
chr6 (80-125)||(7556132-7556177)
[»] chr4 (5 HSPs)
chr4 (174-287)||(15131537-15131650)
chr4 (161-223)||(20512694-20512756)
chr4 (175-225)||(25234224-25234274)
chr4 (50-120)||(20512848-20512919)
chr4 (77-121)||(15131595-15131639)
[»] chr3 (5 HSPs)
chr3 (48-118)||(7641829-7641900)
chr3 (174-223)||(54437806-54437855)
chr3 (87-120)||(45228345-45228378)
chr3 (86-118)||(54437657-54437689)
chr3 (76-120)||(54437816-54437860)
[»] chr8 (5 HSPs)
chr8 (77-121)||(32166655-32166699)
chr8 (195-287)||(33897758-33897850)
chr8 (55-121)||(6630559-6630626)
chr8 (67-120)||(31475039-31475092)
chr8 (174-223)||(32166661-32166710)
[»] chr7 (4 HSPs)
chr7 (174-287)||(34891533-34891646)
chr7 (174-223)||(29152353-29152402)
chr7 (80-121)||(34891547-34891588)
chr7 (76-120)||(7463858-7463902)
[»] scaffold1743 (1 HSPs)
scaffold1743 (53-121)||(770-838)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 40 - 454
Target Start/End: Original strand, 37077626 - 37078040
Alignment:
Q  40 ttaaagagattttcattttctccatctttattcttaaatcagttatcattttcatctcaagaacattaaacttcttcatctcattcgatttataattgaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077626 ttaaagagattttcattttctccatctttattcttaaatcagttatcattttcatctcaagaacattaaacttcttcatctcattcgatttataattgaa 37077725  T
Q  140 tcatatttattatttggggtaaatgtattttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  37077726 tcatatttattatttggggtaaatgtattttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaa 37077825  T
Q  240 catgtgatctctatatcattcatttcaaaattgaatcttatttattatcattaggagaaaattcctctcaattttggaagtagcaacttagacatgtaat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37077826 catgtgatctctatatcattcatttcaaaattgaatcttatttattatcattaggagaaaattactctcaattttggaagtagcaacttagacatgtaat 37077925  T
Q  340 tatgggtgcgtgcattttgaatcccaataaaccagttttaaccacacgatgaaattaccacgtttattttaaccgtggattgagttagtgacaaaacaga 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077926 tatgggtgcgtgcattttgaatcccaataaaccagttttaaccacacgatgaaattaccacgtttattttaaccgtggattgagttagtgacaaaacaga 37078025  T
Q  440 cgcaaatggttacac 454  Q
    |||||||||||||||    
T  37078026 cgcaaatggttacac 37078040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 284
Target Start/End: Original strand, 973098 - 973221
Alignment:
Q  161 aatgtattttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattc 260  Q
    ||||||| || | ||||||||||||| ||||| |||||| ||||||||||||| ||||||||| |        ||||||||||||||||  || ||||||    
T  973098 aatgtatgttggttttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattc 973197  T
Q  261 atttcaaaattgaatcttatttat 284  Q
    ||| |||||||||||| |||||||    
T  973198 attacaaaattgaatcatatttat 973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 7113678 - 7113630
Alignment:
Q  77 atcagttatcattttcatctcaagaacattaaacttcttcatctcattc 125  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  7113678 atcaattatcattttcatctcaagaatattaaacttcttcatctcattc 7113630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 972813 - 972883
Alignment:
Q  51 ttcattttctccatctttattcttaaa-tcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    |||||||| | | |||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||    
T  972813 ttcatttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 2243388 - 2243315
Alignment:
Q  177 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctc 250  Q
    |||||||||| ||||| |||||||||||||| ||||||||| ||||| |       ||||||||||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctc 2243315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 2243377 - 2243339
Alignment:
Q  80 agttatcattttcatctcaagaacattaaacttcttcat 118  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  2243377 agttaccattttcatctcaagaacatcaaacttcttcat 2243339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 37077557 - 37077587
Alignment:
Q  10 attattcttagtgttcttgaaggttttttct 40  Q
    |||||||||||||||||||||||||||||||    
T  37077557 attattcttagtgttcttgaaggttttttct 37077587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 41264387 - 41264425
Alignment:
Q  80 agttatcattttcatctcaagaacattaaacttcttcat 118  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  41264387 agttgtcattttcatctcaagaacattaaactttttcat 41264425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 973125 - 973166
Alignment:
Q  80 agttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||||||||||| ||||||| ||||||||| |||||||||||    
T  973125 agttatcatttttatctcaaaaacattaaatttcttcatctc 973166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    |||||||||||||||  || |||||||||||||| ||||||||| |||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 52432656 - 52432716
Alignment:
Q  62 catctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||    
T  52432656 catctttattcttataatcaattaccattttcatctcaagaacattaaacttcttcatctc 52432716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 46080981 - 46081026
Alignment:
Q  76 aatcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||    
T  46080981 aatcaattaccattttcatctcaagaacattaaacttcttcatctc 46081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 5500891 - 5500843
Alignment:
Q  175 ttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    ||||| || ||||||||| |||||| |||||||||||||||||||||||    
T  5500891 ttttcgtataatcagttaccatttttatctcaaaaacatcaaatttctt 5500843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 2534507 - 2534436
Alignment:
Q  51 ttcattttctccatctttattcttaaa-tcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||||||||| |||||||||| ||||| | | ||| || ||||||||||| ||||| |||||||||||||||    
T  2534507 ttcattttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatctc 2534436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 3367746 - 3367801
Alignment:
Q  55 ttttctccatctttattcttaa-atcagttatcattttcatctcaagaacattaaa 109  Q
    |||||| ||||||||||||||  |||||||||| ||||||||||||||| ||||||    
T  3367746 ttttcttcatctttattcttacgatcagttatcgttttcatctcaagaatattaaa 3367801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 11426666 - 11426631
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaa 209  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11426666 tttttcttacaatcagttaccattttcatctcaaaa 11426631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 42819631 - 42819674
Alignment:
Q  76 aatcagttatcattttcatctcaagaacattaaacttcttcatc 119  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||    
T  42819631 aatcaattatcattttcatctcaagaacataaaacttattcatc 42819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 45136808 - 45136757
Alignment:
Q  52 tcattttctccatctttattctta-aatcagttatcattttcatctcaagaa 102  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||| ||||||    
T  45136808 tcattttcttcatctttattcttacaatcagttattattttcatcgcaagaa 45136757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 10775173 - 10775223
Alignment:
Q  76 aatcagttatcattttcatctcaagaacattaaacttcttcatctcattcg 126  Q
    ||||| ||| ||||||||||| |||||||| ||||||||||||||| ||||    
T  10775173 aatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcg 10775223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 52432836 - 52432882
Alignment:
Q  177 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    |||||||||| ||||| ||||||| |||||||||||||||| |||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttctt 52432882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 10775155 - 10775212
Alignment:
Q  166 attttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    ||||||| ||||||||| ||||| ||| ||||||||||| || ||||||||| |||||    
T  10775155 attttagttttttcttagaatcaattaccattttcatcttaagaacatcaaacttctt 10775212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 34601699 - 34601630
Alignment:
Q  52 tcattttctccatctttattcttaa-atcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    ||||||||| ||||||||||||||  || |||||| ||||||||||||| ||||| |||| | |||||||    
T  34601699 tcattttcttcatctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatct 34601630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 45967901 - 45967852
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    |||||||||||||| |||| ||||||||| ||||||| || |||||||||    
T  45967901 tttttcttacaatctgttatcattttcatttcaaaaatattaaatttctt 45967852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 46080971 - 46081020
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    ||||||||||||||| ||| |||||||||||||| ||||| ||| |||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttctt 46081020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 38839739 - 38839682
Alignment:
Q  62 catctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    |||||||||||||| ||| |||||  ||||||||||||||||||| |||| |||||||||    
T  38839739 catctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatct 38839682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 42819616 - 42819660
Alignment:
Q  169 ttagctttttcttacaatcagttagcattttcatctcaaaaacat 213  Q
    |||| ||||||||||||||| ||| |||||||||||||| |||||    
T  42819616 ttagttttttcttacaatcaattatcattttcatctcaagaacat 42819660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 2249024 - 2248957
Alignment:
Q  54 attttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    ||||||| |||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||    
T  2249024 attttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatct 2248957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 16863459 - 16863505
Alignment:
Q  177 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttctt 16863505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 38577027 - 38576957
Alignment:
Q  52 tcattttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    ||||||||| ||| |||||| ||| ||||||||| ||||||||||| |||||||||||| |||||||||||    
T  38577027 tcattttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctc 38576957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 16863453 - 16863510
Alignment:
Q  64 tctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||    
T  16863453 tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatct 16863510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 16576236 - 16576303
Alignment:
Q  55 ttttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||||| || |||| |||||| ||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  16576236 ttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctc 16576303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 16576248 - 16576324
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctc 250  Q
    ||||||||||||||| ||| ||||||| |||||| ||||||||| ||||| |       ||||||||||||||||||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctc 16576324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 34176630 - 34176697
Alignment:
Q  54 attttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    ||||||| ||||||||||  || ||||||||| ||||||||||| ||||| || ||||||||||||||    
T  34176630 attttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatct 34176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 38576843 - 38576750
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattga 273  Q
    ||||||||||||||||||| |||||||||||||| |  |||||| |||||         ||||||||||||| |||| ||||| |||||| |||||| ||    
T  38576843 tttttcttacaatcagttaccattttcatctcaatataatcaaacttctt---------cattcaacatgtgttctccatatccttcattccaaaatcga 38576753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 20067902 - 20067966
Alignment:
Q  53 cattttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttc 116  Q
    |||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  20067902 cattttcttcatttttattcttagaatcagttatcattttcatctcaataacattatacttcttc 20067966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 32342592 - 32342643
Alignment:
Q  166 attttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaa 217  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  32342592 attttagttttttcttacaatcaattatcattttcatctcaaaaacatcaaa 32342643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 32047194 - 32047233
Alignment:
Q  86 cattttcatctcaagaacattaaacttcttcatctcattc 125  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattc 32047233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 32342610 - 32342659
Alignment:
Q  76 aatcagttatcattttcatctcaagaacattaaacttcttcatctcattc 125  Q
    ||||| |||||||||||||||||| ||||| |||||| ||||||||||||    
T  32342610 aatcaattatcattttcatctcaaaaacatcaaactttttcatctcattc 32342659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 20206527 - 20206479
Alignment:
Q  177 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaa 225  Q
    |||||||||||| ||| |||||||||||||| ||||||||| |||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaa 20206479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 22100550 - 22100502
Alignment:
Q  177 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaa 225  Q
    |||||||||||| ||| |||||||||||||| ||||||||| |||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaa 22100502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 20206531 - 20206481
Alignment:
Q  66 tttattctta-aatcagttatcattttcatctcaagaacattaaacttctt 115  Q
    |||||||||| ||||| |||||||||||||||||| ||||| |||||||||    
T  20206531 tttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 22100554 - 22100504
Alignment:
Q  66 tttattctta-aatcagttatcattttcatctcaagaacattaaacttctt 115  Q
    |||||||||| ||||| |||||||||||||||||| ||||| |||||||||    
T  22100554 tttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 7556177 - 7556132
Alignment:
Q  80 agttatcattttcatctcaagaacattaaacttcttcatctcattc 125  Q
    |||| ||||||||||||||||||||||||| || ||||| ||||||    
T  7556177 agttgtcattttcatctcaagaacattaaatttattcatatcattc 7556132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 287
Target Start/End: Complemental strand, 15131650 - 15131537
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattga 273  Q
    |||||||||| |||||||| |||||| ||||||| ||||||||||||||| |       |||||| |||||||||||||| |  ||| ||| |||||| |    
T  15131650 tttttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctctatttacttcgtttaaaaattaa 15131551  T
Q  274 atcttatttattat 287  Q
    ||||||||| ||||    
T  15131550 atcttatttcttat 15131537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 20512756 - 20512694
Alignment:
Q  161 aatgtattttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    |||||||||| | ||||||||||||| ||||| | |||||||||||||||||| || ||||||    
T  20512756 aatgtattttggttttttcttacaattagttatctttttcatctcaaaaacattaagtttctt 20512694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 25234274 - 25234224
Alignment:
Q  175 ttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaa 225  Q
    ||||||||  |||||||| |||||||||||||| |||||||||||||||||    
T  25234274 ttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaa 25234224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 20512919 - 20512848
Alignment:
Q  50 tttcattttctccatctttattcttaaa-tcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    ||||||||||| |||||||||| ||||| ||| || |||||||||||| |  ||||| ||||||||||||||    
T  20512919 tttcattttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatct 20512848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 15131639 - 15131595
Alignment:
Q  77 atcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||||||| |||||| ||||||||||||| ||| |||||||||||    
T  15131639 atcagttaccatttttatctcaagaacatcaaatttcttcatctc 15131595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 7641829 - 7641900
Alignment:
Q  48 attttcattttctccatctttattcttaaa-tcagttatcattttcatctcaagaacattaaacttcttcat 118  Q
    ||||||||||||| || ||||||||||||| |||||||||||||| || |||||||||| |||||| |||||    
T  7641829 attttcattttcttcaactttattcttaaaatcagttatcatttttatatcaagaacatcaaactttttcat 7641900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 54437806 - 54437855
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttctt 54437855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 45228378 - 45228345
Alignment:
Q  87 attttcatctcaagaacattaaacttcttcatct 120  Q
    |||||||||||||||||||||||||| |||||||    
T  45228378 attttcatctcaagaacattaaactttttcatct 45228345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 54437657 - 54437689
Alignment:
Q  86 cattttcatctcaagaacattaaacttcttcat 118  Q
    |||||||||||||| ||||||||||||||||||    
T  54437657 cattttcatctcaataacattaaacttcttcat 54437689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 54437816 - 54437860
Alignment:
Q  76 aatcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    ||||||||| |||||| ||||||| ||||| ||||||||||||||    
T  54437816 aatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 32166699 - 32166655
Alignment:
Q  77 atcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  32166699 atcaattatcattttcatctcaagaacatcaaacttcttcatctc 32166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 33897758 - 33897850
Alignment:
Q  195 attttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattgaatcttatttattat 287  Q
    ||||||||||||||||||||||| |||||||       |||||||||||| | ||| || |  ||| ||||||||| ||||||||||||||||    
T  33897758 attttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgtaacctccatttatttcgtttcaaaatcgaatcttatttattat 33897850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 6630626 - 6630559
Alignment:
Q  55 ttttctccatctttattctt-aaatcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||||| | ||||||||||| |||||| ||| ||||||||||| |||| ||||||| |||||||||||    
T  6630626 ttttcttcgtctttattcttcaaatcaattaccattttcatcttaagatcattaaatttcttcatctc 6630559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 31475039 - 31475092
Alignment:
Q  67 ttattcttaaatcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    ||||| || |||||||||  ||||| ||||||||||||| ||||||||||||||    
T  31475039 ttatttttgaatcagttactatttttatctcaagaacatcaaacttcttcatct 31475092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 32166710 - 32166661
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||| |||||    
T  32166710 tttttcttactatcaattatcattttcatctcaagaacatcaaacttctt 32166661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 287
Target Start/End: Original strand, 34891533 - 34891646
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattga 273  Q
    |||||||||| || ||||| |||||| ||||||| ||||||||||||||| |       |||||||||||||||||| || |  ||| ||  ||||||||    
T  34891533 tttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccatttgcttcgttataaaattga 34891632  T
Q  274 atcttatttattat 287  Q
    ||||||||| ||||    
T  34891633 atcttatttgttat 34891646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 29152402 - 29152353
Alignment:
Q  174 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 223  Q
    |||||||||||||||||||  ||||||||||||| ||||||||| |||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttctt 29152353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 34891547 - 34891588
Alignment:
Q  80 agttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||||||||||| ||||||||||||| ||| |||||||||||    
T  34891547 agttatcattttgatctcaagaacatcaaatttcttcatctc 34891588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 7463858 - 7463902
Alignment:
Q  76 aatcagttatcattttcatctcaagaacattaaacttcttcatct 120  Q
    |||| |||||||||||||| | |||||||| ||||||||||||||    
T  7463858 aatcggttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 770 - 838
Alignment:
Q  53 cattttctccatctttattcttaaatcagttatcattttcatctcaagaacattaaacttcttcatctc 121  Q
    |||||||| ||| |||||| ||| |||| ||||||||||| | ||||| | || |||||||||||||||    
T  770 cattttcttcatttttatttttacatcatttatcattttcctttcaagtatatcaaacttcttcatctc 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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